CloneSet66


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Clone
Mass
Clones in
CloneSet
Parameter
Count
Clone
Similarity
Syntax Category
[Sequence Length]
6340.987stmt_list[3]
Clone AbstractionParameter Bindings
Clone Instance
(Click to see clone)
Line CountSource Line
Source File
16164
Bio/SeqIO/_convert.py
26199
Bio/SeqIO/_convert.py
36215
Bio/SeqIO/_convert.py
Clone Instance
1
Line Count
6
Source Line
164
Source File
Bio/SeqIO/_convert.py

    mapping = "".join([chr(0) for ascii in range(0,59)]+[chr(33+int(round(phred_quality_from_solexa(q))))
                                                         for q in range( -5,62+1)]+[chr(0) for ascii in range(127,256)]) 


    assert len(mapping)==256 
    return _fastq_generic(in_handle,out_handle,mapping) 


Clone Instance
2
Line Count
6
Source Line
199
Source File
Bio/SeqIO/_convert.py

    mapping = "".join([chr(0) for ascii in range(0,59)]+[chr(64+int(round(phred_quality_from_solexa(q))))
                                                         for q in range( -5,62+1)]+[chr(0) for ascii in range(127,256)]) 


    assert len(mapping)==256 
    return _fastq_generic(in_handle,out_handle,mapping) 


Clone Instance
3
Line Count
6
Source Line
215
Source File
Bio/SeqIO/_convert.py

    mapping = "".join([chr(0) for ascii in range(0,64)]+[chr(64+int(round(solexa_quality_from_phred(q))))
                                                         for q in range(0,62+1)]+[chr(0) for ascii in range(127,256)]) 


    assert len(mapping)==256 
    return _fastq_generic(in_handle,out_handle,mapping) 


Clone AbstractionParameter Count: 4Parameter Bindings

mapping = "".join([chr(0) for ascii in range(0, [[#variable5d01bce0]])]+[chr( [[#variable77c04300]]+int(round( [[#variable5c08eb40]](q)))) for q in range( [[#variable5d01bc00]],62+1)]+[chr(0) for ascii in range(127,256)]) 
assert len(mapping)==256 
return _fastq_generic(in_handle,out_handle,mapping) 
 

CloneAbstraction
Parameter Bindings
Parameter
Index
Clone
Instance
Parameter
Name
Value
11[[#5d01bce0]]
64 
12[[#5d01bce0]]
59 
13[[#5d01bce0]]
59 
21[[#77c04300]]
64 
22[[#77c04300]]
64 
23[[#77c04300]]
33 
31[[#5c08eb40]]
solexa_quality_from_phred 
32[[#5c08eb40]]
phred_quality_from_solexa 
33[[#5c08eb40]]
phred_quality_from_solexa 
41[[#5d01bc00]]
0 
42[[#5d01bc00]]
-5 
43[[#5d01bc00]]
-5