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| Clone Mass | Clones in CloneSet | Parameter Count | Clone Similarity | Syntax Category [Sequence Length] |
|---|---|---|---|---|
| 3 | 3 | 2 | 0.988 | simple_stmt |
| Clone Abstraction | Parameter Bindings |
| Clone Instance (Click to see clone) | Line Count | Source Line | Source File |
|---|---|---|---|
| 1 | 3 | 584 | Bio/Data/CodonTable.py |
| 2 | 3 | 587 | Bio/Data/CodonTable.py |
| 3 | 3 | 590 | Bio/Data/CodonTable.py |
| ||||
#Note ambiguous_nucleotide_values['R'] = 'AG' (etc)
#This will generate things like 'TRR' from ['TAG', 'TGA'], which
#we don't want to include:
c1_list = [letter for (letter,meanings) in
ambiguous_nucleotide_values.iteritems( )
if set([codon[0] for codon in codons]).issuperset(set(meanings))]
|
| ||||
c2_list = [letter for (letter,meanings) in
ambiguous_nucleotide_values.iteritems( )
if set([codon[1] for codon in codons]).issuperset(set(meanings))]
|
| ||||
c3_list = [letter for (letter,meanings) in
ambiguous_nucleotide_values.iteritems( )
if set([codon[2] for codon in codons]).issuperset(set(meanings))]
|
| |||
[[#variable5e7bd960]]= [letter for (letter,meanings) in ambiguous_nucleotide_values.iteritems( ) if set([codon[ [[#variable5e7bd8c0]]] for codon in codons]).issuperset(set(meanings))] |
| CloneAbstraction |
| Parameter Index | Clone Instance | Parameter Name | Value |
|---|---|---|---|
| 1 | 1 | [[#5e7bd960]] | #Note ambiguous_nucleotide_values['R'] = 'AG' (etc) #This will generate things like 'TRR' from ['TAG', 'TGA'], which #we don't want to include: c1_list |
| 1 | 2 | [[#5e7bd960]] | c2_list |
| 1 | 3 | [[#5e7bd960]] | c3_list |
| 2 | 1 | [[#5e7bd8c0]] | 0 |
| 2 | 2 | [[#5e7bd8c0]] | 1 |
| 2 | 3 | [[#5e7bd8c0]] | 2 |