CloneSet141


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Clone
Mass
Clones in
CloneSet
Parameter
Count
Clone
Similarity
Syntax Category
[Sequence Length]
5530.967compound_stmt
Clone AbstractionParameter Bindings
Clone Instance
(Click to see clone)
Line CountSource Line
Source File
151376
Bio/Blast/NCBIStandalone.py
251382
Bio/Blast/NCBIStandalone.py
351388
Bio/Blast/NCBIStandalone.py
451394
Bio/Blast/NCBIStandalone.py
551400
Bio/Blast/NCBIStandalone.py
Clone Instance
1
Line Count
5
Source Line
1376
Source File
Bio/Blast/NCBIStandalone.py

    def dropoff_1st_pass(self,line): 
        score,bits =  _re_search("X1: (\\d+) \\(\\s*([0-9,.]+) bits\\)",line,"""I could not find the dropoff in line
%s"""                                                                        %line) 

        self._params.dropoff_1st_pass = _safe_int(score),_safe_float(bits) 


Clone Instance
2
Line Count
5
Source Line
1382
Source File
Bio/Blast/NCBIStandalone.py

    def gap_x_dropoff(self,line): 
        score,bits =  _re_search("X2: (\\d+) \\(\\s*([0-9,.]+) bits\\)",line,"""I could not find the gap dropoff in line
%s"""                                                                        %line) 

        self._params.gap_x_dropoff = _safe_int(score),_safe_float(bits) 


Clone Instance
3
Line Count
5
Source Line
1388
Source File
Bio/Blast/NCBIStandalone.py

    def gap_x_dropoff_final(self,line): 
        score,bits =  _re_search("X3: (\\d+) \\(\\s*([0-9,.]+) bits\\)",line,"""I could not find the gap dropoff final in line
%s"""                                                                        %line) 

        self._params.gap_x_dropoff_final = _safe_int(score),_safe_float(bits) 


Clone Instance
4
Line Count
5
Source Line
1394
Source File
Bio/Blast/NCBIStandalone.py

    def gap_trigger(self,line): 
        score,bits =  _re_search("S1: (\\d+) \\(\\s*([0-9,.]+) bits\\)",line,"""I could not find the gap trigger in line
%s"""                                                                        %line) 

        self._params.gap_trigger = _safe_int(score),_safe_float(bits) 


Clone Instance
5
Line Count
5
Source Line
1400
Source File
Bio/Blast/NCBIStandalone.py

    def blast_cutoff(self,line): 
        score,bits =  _re_search("S2: (\\d+) \\(\\s*([0-9,.]+) bits\\)",line,"""I could not find the blast cutoff in line
%s"""                                                                        %line) 

        self._params.blast_cutoff = _safe_int(score),_safe_float(bits) 


Clone AbstractionParameter Count: 3Parameter Bindings

def [[#variable5dbc3460]](self,line):
  score,bits = _re_search( [[#variable5dbc3400]],line, [[#variable5dbc3380]]%line) 
  self._params. [[#variable5dbc3460]]= _safe_int(score),_safe_float(bits) 
 

CloneAbstraction
Parameter Bindings
Parameter
Index
Clone
Instance
Parameter
Name
Value
11[[#5dbc3460]]
blast_cutoff 
12[[#5dbc3460]]
gap_trigger 
13[[#5dbc3460]]
gap_x_dropoff_final 
14[[#5dbc3460]]
gap_x_dropoff 
15[[#5dbc3460]]
dropoff_1st_pass 
21[[#5dbc3400]]
"S2: (\\d+) \\(\\s*([0-9,.]+) bits\\)" 
22[[#5dbc3400]]
"S1: (\\d+) \\(\\s*([0-9,.]+) bits\\)" 
23[[#5dbc3400]]
"X3: (\\d+) \\(\\s*([0-9,.]+) bits\\)" 
24[[#5dbc3400]]
"X2: (\\d+) \\(\\s*([0-9,.]+) bits\\)" 
25[[#5dbc3400]]
"X1: (\\d+) \\(\\s*([0-9,.]+) bits\\)" 
31[[#5dbc3380]]
"""I could not find the blast cutoff in line
%s""" 
32[[#5dbc3380]]
"""I could not find the gap trigger in line
%s""" 
33[[#5dbc3380]]
"""I could not find the gap dropoff final in line
%s""" 
34[[#5dbc3380]]
"""I could not find the gap dropoff in line
%s""" 
35[[#5dbc3380]]
"""I could not find the dropoff in line
%s"""