CloneSet60


Clone Mass	Clones in CloneSet	Parameter Count	Clone Similarity	Syntax Category [Sequence Length]
14	2	0	1.000	stmt_list[6]

Clone Abstraction

Parameter Bindings

Clone Instance (Click to see clone)	Line Count	Source Line	Source File
1	14	874	Bio/GenBank/Scanner.py
2	14	298	Bio/SeqIO/InsdcIO.py

Clone Instance
1

Line Count
14

Source Line
874

Source File

Bio/GenBank/Scanner.py

            assert line[44:47] in ["   ","ss-","ds-","ms-"],"""LOCUS line does not have valid strand type (Single stranded, ...):
"""                                                         +line 
            assert line[47:54].strip( )=="" or
               line[47:54].strip( ).find("DNA")!= -1 or
               line[47:54].strip( ).find("RNA")!= -1,"""LOCUS line does not contain valid sequence type (DNA, RNA, ...):
"""                                                  +line 
            assert line[54:55]==" ","""LOCUS line does not contain space at position 55:
"""                                 +line 
            assert line[55:63].strip( ) in ["","linear","circular"],"""LOCUS line does not contain valid entry (linear, circular, ...):
"""                                                                 +line 
            assert line[63:64]==" ","""LOCUS line does not contain space at position 64:
"""                                 +line 
            assert line[67:68]==" ","""LOCUS line does not contain space at position 68:
"""                                 +line

Clone Instance
2

Line Count
14

Source Line
298

Source File

Bio/SeqIO/InsdcIO.py

        assert line[44:47] in ["   ","ss-","ds-","ms-"],"""LOCUS line does not have valid strand type (Single stranded, ...):
"""                                                     +line 
        assert line[47:54].strip( )=="" or
           line[47:54].strip( ).find("DNA")!= -1 or
           line[47:54].strip( ).find("RNA")!= -1,"""LOCUS line does not contain valid sequence type (DNA, RNA, ...):
"""                                              +line 
        assert line[54:55]==" ","""LOCUS line does not contain space at position 55:
"""                             +line 
        assert line[55:63].strip( ) in ["","linear","circular"],"""LOCUS line does not contain valid entry (linear, circular, ...):
"""                                                             +line 
        assert line[63:64]==" ","""LOCUS line does not contain space at position 64:
"""                             +line 
        assert line[67:68]==" ","""LOCUS line does not contain space at position 68:
"""                             +line

Clone Abstraction

Parameter Count: 0

Parameter Bindings

assert line[44:47] in ["   ","ss-","ds-","ms-"],"""LOCUS line does not have valid strand type (Single stranded, ...):
"""                                             +line 
assert line[47:54].strip( )=="" or line[47:54].strip( ).find("DNA")!= -1 or line[47:54].strip( ).find("RNA")!= -1,"""LOCUS line does not contain valid sequence type (DNA, RNA, ...):
"""                                                                                                               +line 
assert line[54:55]==" ","""LOCUS line does not contain space at position 55:
"""                     +line 
assert line[55:63].strip( ) in ["","linear","circular"],"""LOCUS line does not contain valid entry (linear, circular, ...):
"""                                                     +line 
assert line[63:64]==" ","""LOCUS line does not contain space at position 64:
"""                     +line 
assert line[67:68]==" ","""LOCUS line does not contain space at position 68:
"""                     +line

CloneAbstraction

Parameter Bindings
Parameter Index	Clone Instance	Parameter Name	Value
None