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Clone Mass | Clones in CloneSet | Parameter Count | Clone Similarity | Syntax Category [Sequence Length] |
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8 | 2 | 3 | 0.974 | compound_stmt |
Clone Abstraction | Parameter Bindings |
Clone Instance (Click to see clone) | Line Count | Source Line | Source File |
---|---|---|---|
1 | 8 | 287 | Bio/Sequencing/Ace.py |
2 | 8 | 304 | Bio/Sequencing/Ace.py |
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while True: if not line.startswith("AF "): break record.af.append(af(line)) try : line = handle.next( ) except StopIteration: raise ValueError("Unexpected end of AF block") |
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while True: if not line.startswith("BS "): break record.bs.append(bs(line)) try : line = handle.next( ) except StopIteration: raise ValueError("Failed to find end of BS block") # now read all the read data # it starts with a 'RD', and then a mandatory QA # then follows an optional DS # CT,RT,WA,WR may or may not be there in unlimited quantity. They might refer to the actual read or contig, # or, if encountered at the end of file, to any previous read or contig. the sort() method deals # with that later. |
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while True: if not line.startswith( [[#variable7d145a20]]): break record. [[#variable7d1459a0]].append( [[#variable7d1459a0]](line)) try : line = handle.next( ) except StopIteration: raise ValueError( [[#variable7d145920]]) # now read all the read data # it starts with a 'RD', and then a mandatory QA # then follows an optional DS # CT,RT,WA,WR may or may not be there in unlimited quantity. They might refer to the actual read or contig, # or, if encountered at the end of file, to any previous read or contig. the sort() method deals # with that later. |
CloneAbstraction |
Parameter Index | Clone Instance | Parameter Name | Value |
---|---|---|---|
1 | 1 | [[#7d145a20]] | "AF " |
1 | 2 | [[#7d145a20]] | "BS " |
2 | 1 | [[#7d1459a0]] | af |
2 | 2 | [[#7d1459a0]] | bs |
3 | 1 | [[#7d145920]] | "Unexpected end of AF block" |
3 | 2 | [[#7d145920]] | "Failed to find end of BS block" |