CloneSet326


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Clone
Mass
Clones in
CloneSet
Parameter
Count
Clone
Similarity
Syntax Category
[Sequence Length]
8230.974compound_stmt
Clone AbstractionParameter Bindings
Clone Instance
(Click to see clone)
Line CountSource Line
Source File
18287
Bio/Sequencing/Ace.py
28304
Bio/Sequencing/Ace.py
Clone Instance
1
Line Count
8
Source Line
287
Source File
Bio/Sequencing/Ace.py

        while True: 
             if not line.startswith("AF "): 
                  break 
             record.af.append(af(line)) 
             try :
                 
                 line = handle.next( ) 
             except StopIteration: 
                  raise ValueError("Unexpected end of AF block") 
             


Clone Instance
2
Line Count
8
Source Line
304
Source File
Bio/Sequencing/Ace.py

        while True: 
             if not line.startswith("BS "): 
                  break 
             record.bs.append(bs(line)) 
             try :
                 
                 line = handle.next( ) 
             except StopIteration: 
                  raise ValueError("Failed to find end of BS block") 

          # now read all the read data
          # it starts with a 'RD', and then a mandatory QA
          # then follows an optional DS
          # CT,RT,WA,WR may or may not be there in unlimited quantity. They might refer to the actual read or contig,
          # or, if encountered at the end of file, to any previous read or contig. the sort() method deals
          # with that later.
             


Clone AbstractionParameter Count: 3Parameter Bindings

while True:
  if not line.startswith( [[#variable7d145a20]]):
  
    break 
  record. [[#variable7d1459a0]].append( [[#variable7d1459a0]](line)) 
  try :
  
    line = handle.next( ) 
  except StopIteration:
  
    raise ValueError( [[#variable7d145920]]) 
    # now read all the read data
    # it starts with a 'RD', and then a mandatory QA
    # then follows an optional DS
    # CT,RT,WA,WR may or may not be there in unlimited quantity. They might refer to the actual read or contig,
    # or, if encountered at the end of file, to any previous read or contig. the sort() method deals
    # with that later.
  
 

CloneAbstraction
Parameter Bindings
Parameter
Index
Clone
Instance
Parameter
Name
Value
11[[#7d145a20]]
"AF " 
12[[#7d145a20]]
"BS " 
21[[#7d1459a0]]
af 
22[[#7d1459a0]]
bs 
31[[#7d145920]]
"Unexpected end of AF block" 
32[[#7d145920]]
"Failed to find end of BS block"