| Previous CloneSet | Next CloneSet | Back to Main Report |
| Clone Mass | Clones in CloneSet | Parameter Count | Clone Similarity | Syntax Category [Sequence Length] |
|---|---|---|---|---|
| 17 | 2 | 3 | 0.981 | compound_stmt |
| Clone Abstraction | Parameter Bindings |
| Clone Instance (Click to see clone) | Line Count | Source Line | Source File |
|---|---|---|---|
| 1 | 17 | 346 | Bio/SeqFeature.py |
| 2 | 17 | 364 | Bio/SeqFeature.py |
| ||||
class WithinPosition(AbstractPosition):
"""Specify the position of a boundary within some coordinates.
Arguments:
o position - The start position of the boundary
o extension - The range to which the boundary can extend.
This allows dealing with a position like ((1.4)..100). This
indicates that the start of the sequence is somewhere between 1
and 4. To represent that with this class we would set position as
1 and extension as 3.
"""
def __init__(self,position,extension = 0):
AbstractPosition.__init__(self,position,extension)
def __str__(self):
return "(%s.%s)"%(self.position,self.position+self.extension)
|
| ||||
class BetweenPosition(AbstractPosition):
"""Specify the position of a boundary between two coordinates.
Arguments:
o position - The start position of the boundary.
o extension - The range to the other position of a boundary.
This specifies a coordinate which is found between the two positions.
So this allows us to deal with a position like ((1^2)..100). To
represent that with this class we set position as 1 and the
extension as 1.
"""
def __init__(self,position,extension = 0):
AbstractPosition.__init__(self,position,extension)
def __str__(self):
return "(%s^%s)"%(self.position,self.position+self.extension)
|
| |||
class [[#variable2dc4af40]](AbstractPosition):
[[#variable2dc4a000]]
def __init__(self,position,extension = 0):
AbstractPosition.__init__(self,position,extension)
def __str__(self):
return [[#variable2dc4b9c0]]%(self.position,self.position+self.extension)
|
| CloneAbstraction |
| Parameter Index | Clone Instance | Parameter Name | Value |
|---|---|---|---|
| 1 | 1 | [[#2dc4af40]] | BetweenPosition |
| 1 | 2 | [[#2dc4af40]] | WithinPosition |
| 2 | 1 | [[#2dc4a000]] | """Specify the position of a boundary between two coordinates.
Arguments:
o position - The start position of the boundary.
o extension - The range to the other position of a boundary.
This specifies a coordinate which is found between the two positions.
So this allows us to deal with a position like ((1^2)..100). To
represent that with this class we set position as 1 and the
extension as 1.
""" |
| 2 | 2 | [[#2dc4a000]] | """Specify the position of a boundary within some coordinates.
Arguments:
o position - The start position of the boundary
o extension - The range to which the boundary can extend.
This allows dealing with a position like ((1.4)..100). This
indicates that the start of the sequence is somewhere between 1
and 4. To represent that with this class we would set position as
1 and extension as 3.
""" |
| 3 | 1 | [[#2dc4b9c0]] | "(%s^%s)" |
| 3 | 2 | [[#2dc4b9c0]] | "(%s.%s)" |