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| Clone Mass | Clones in CloneSet | Parameter Count | Clone Similarity | Syntax Category [Sequence Length] |
|---|---|---|---|---|
| 16 | 2 | 6 | 0.956 | compound_stmt |
| Clone Abstraction | Parameter Bindings |
| Clone Instance (Click to see clone) | Line Count | Source Line | Source File |
|---|---|---|---|
| 1 | 16 | 962 | BioSQL/Loader.py |
| 2 | 16 | 1013 | BioSQL/Loader.py |
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def _get_seqfeature_dbxref(self,seqfeature_id,dbxref_id,rank):
""" Check for a pre-existing seqfeature_dbxref entry with the passed
seqfeature_id and dbxref_id. If one does not exist, insert new
data
"""
# Check for an existing record
sql = "SELECT seqfeature_id, dbxref_id FROM seqfeature_dbxref "
"WHERE seqfeature_id = '%s' AND dbxref_id = '%s'"
result = self.adaptor.execute_and_fetch_col0(sql,(seqfeature_id,dbxref_id))
# If there was a record, return without executing anything, else create
# the record and return
if result:
return result
return self._add_seqfeature_dbxref(seqfeature_id,dbxref_id,rank)
|
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def _get_bioentry_dbxref(self,bioentry_id,dbxref_id,rank):
""" Check for a pre-existing bioentry_dbxref entry with the passed
seqfeature_id and dbxref_id. If one does not exist, insert new
data
"""
# Check for an existing record
sql = "SELECT bioentry_id, dbxref_id FROM bioentry_dbxref "
"WHERE bioentry_id = '%s' AND dbxref_id = '%s'"
result = self.adaptor.execute_and_fetch_col0(sql,(bioentry_id,dbxref_id))
# If there was a record, return without executing anything, else create
# the record and return
if result:
return result
return self._add_bioentry_dbxref(bioentry_id,dbxref_id,rank)
|
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def [[#variable6189e200]](self, [[#variable6189e160]],dbxref_id,rank):
[[#variable6189e0e0]]
# Check for an existing record
sql = [[#variable6189e080]] [[#variable6189e020]]
result = self.adaptor.execute_and_fetch_col0(sql,( [[#variable6189e160]],dbxref_id))
# If there was a record, return without executing anything, else create
# the record and return
if result:
return result
return self. [[#variable761d5f80]]( [[#variable6189e160]],dbxref_id,rank)
|
| CloneAbstraction |
| Parameter Index | Clone Instance | Parameter Name | Value |
|---|---|---|---|
| 1 | 1 | [[#6189e200]] | _get_bioentry_dbxref |
| 1 | 2 | [[#6189e200]] | _get_seqfeature_dbxref |
| 2 | 1 | [[#6189e160]] | bioentry_id |
| 2 | 2 | [[#6189e160]] | seqfeature_id |
| 3 | 1 | [[#6189e0e0]] | """ Check for a pre-existing bioentry_dbxref entry with the passed
seqfeature_id and dbxref_id. If one does not exist, insert new
data
""" |
| 3 | 2 | [[#6189e0e0]] | """ Check for a pre-existing seqfeature_dbxref entry with the passed
seqfeature_id and dbxref_id. If one does not exist, insert new
data
""" |
| 4 | 1 | [[#6189e080]] | "SELECT bioentry_id, dbxref_id FROM bioentry_dbxref " |
| 4 | 2 | [[#6189e080]] | "SELECT seqfeature_id, dbxref_id FROM seqfeature_dbxref " |
| 5 | 1 | [[#6189e020]] | "WHERE bioentry_id = '%s' AND dbxref_id = '%s'" |
| 5 | 2 | [[#6189e020]] | "WHERE seqfeature_id = '%s' AND dbxref_id = '%s'" |
| 6 | 1 | [[#761d5f80]] | _add_bioentry_dbxref |
| 6 | 2 | [[#761d5f80]] | _add_seqfeature_dbxref |