CloneSet245


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Clone
Mass
Clones in
CloneSet
Parameter
Count
Clone
Similarity
Syntax Category
[Sequence Length]
4350.963stmt_list[2]
Clone AbstractionParameter Bindings
Clone Instance
(Click to see clone)
Line CountSource Line
Source File
14692
Bio/Blast/NCBIStandalone.py
28703
Bio/Blast/NCBIStandalone.py
37713
Bio/Blast/NCBIStandalone.py
Clone Instance
1
Line Count
4
Source Line
692
Source File
Bio/Blast/NCBIStandalone.py

        attempt_read_and_call(uhandle,consumer.query_length,has_re = re.compile("[Ll]ength of query")) 

        read_and_call(uhandle,consumer.database_length,has_re = re.compile("[Ll]ength of \\s*[Dd]atabase")) 


Clone Instance
2
Line Count
8
Source Line
703
Source File
Bio/Blast/NCBIStandalone.py

        # Not in blastx 2.2.1
        attempt_read_and_call(uhandle,consumer.effective_query_length,has_re = re.compile("[Ee]ffective length of query")) 



        # This is not in BLASTP 2.2.15
        attempt_read_and_call(uhandle,consumer.effective_database_length,has_re = re.compile("[Ee]ffective length of \\s*[Dd]atabase")) 


Clone Instance
3
Line Count
7
Source Line
713
Source File
Bio/Blast/NCBIStandalone.py

        # Not in blastx 2.2.1, added a ':' to distinguish between
        # this and the 'effective search space used' line
        attempt_read_and_call(uhandle,consumer.effective_search_space,has_re = re.compile("[Ee]ffective search space:")) 


        # Does not appear in BLASTP 2.0.5
        attempt_read_and_call(uhandle,consumer.effective_search_space_used,has_re = re.compile("[Ee]ffective search space used")) 


Clone AbstractionParameter Count: 5Parameter Bindings

# Not in blastx 2.2.1
# Not in blastx 2.2.1, added a ':' to distinguish between
# this and the 'effective search space used' line
attempt_read_and_call(uhandle,consumer. [[#variable77c13b60]],has_re = re.compile( [[#variable77c13aa0]])) 
 [[#variable77c12c00]](uhandle,consumer. [[#variable71b37b60]],has_re = re.compile( [[#variable71b373e0]])) 
 

CloneAbstraction
Parameter Bindings
Parameter
Index
Clone
Instance
Parameter
Name
Value
11[[#77c13b60]]
query_length 
12[[#77c13b60]]
effective_query_length 
13[[#77c13b60]]
effective_search_space 
21[[#77c13aa0]]
"[Ll]ength of query" 
22[[#77c13aa0]]
"[Ee]ffective length of query" 
23[[#77c13aa0]]
"[Ee]ffective search space:" 
31[[#77c12c00]]
read_and_call 
32[[#77c12c00]]
# This is not in BLASTP 2.2.15
attempt_read_and_call 
33[[#77c12c00]]
# Does not appear in BLASTP 2.0.5
attempt_read_and_call 
41[[#71b37b60]]
database_length 
42[[#71b37b60]]
effective_database_length 
43[[#71b37b60]]
effective_search_space_used 
51[[#71b373e0]]
"[Ll]ength of \\s*[Dd]atabase" 
52[[#71b373e0]]
"[Ee]ffective length of \\s*[Dd]atabase" 
53[[#71b373e0]]
"[Ee]ffective search space used"