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Clone Mass | Clones in CloneSet | Parameter Count | Clone Similarity | Syntax Category [Sequence Length] |
---|---|---|---|---|
4 | 3 | 5 | 0.963 | stmt_list[2] |
Clone Abstraction | Parameter Bindings |
Clone Instance (Click to see clone) | Line Count | Source Line | Source File |
---|---|---|---|
1 | 4 | 692 | Bio/Blast/NCBIStandalone.py |
2 | 8 | 703 | Bio/Blast/NCBIStandalone.py |
3 | 7 | 713 | Bio/Blast/NCBIStandalone.py |
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attempt_read_and_call(uhandle,consumer.query_length,has_re = re.compile("[Ll]ength of query")) read_and_call(uhandle,consumer.database_length,has_re = re.compile("[Ll]ength of \\s*[Dd]atabase")) |
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# Not in blastx 2.2.1 attempt_read_and_call(uhandle,consumer.effective_query_length,has_re = re.compile("[Ee]ffective length of query")) # This is not in BLASTP 2.2.15 attempt_read_and_call(uhandle,consumer.effective_database_length,has_re = re.compile("[Ee]ffective length of \\s*[Dd]atabase")) |
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# Not in blastx 2.2.1, added a ':' to distinguish between # this and the 'effective search space used' line attempt_read_and_call(uhandle,consumer.effective_search_space,has_re = re.compile("[Ee]ffective search space:")) # Does not appear in BLASTP 2.0.5 attempt_read_and_call(uhandle,consumer.effective_search_space_used,has_re = re.compile("[Ee]ffective search space used")) |
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# Not in blastx 2.2.1 # Not in blastx 2.2.1, added a ':' to distinguish between # this and the 'effective search space used' line attempt_read_and_call(uhandle,consumer. [[#variable77c13b60]],has_re = re.compile( [[#variable77c13aa0]])) [[#variable77c12c00]](uhandle,consumer. [[#variable71b37b60]],has_re = re.compile( [[#variable71b373e0]])) |
CloneAbstraction |
Parameter Index | Clone Instance | Parameter Name | Value |
---|---|---|---|
1 | 1 | [[#77c13b60]] | query_length |
1 | 2 | [[#77c13b60]] | effective_query_length |
1 | 3 | [[#77c13b60]] | effective_search_space |
2 | 1 | [[#77c13aa0]] | "[Ll]ength of query" |
2 | 2 | [[#77c13aa0]] | "[Ee]ffective length of query" |
2 | 3 | [[#77c13aa0]] | "[Ee]ffective search space:" |
3 | 1 | [[#77c12c00]] | read_and_call |
3 | 2 | [[#77c12c00]] | # This is not in BLASTP 2.2.15 attempt_read_and_call |
3 | 3 | [[#77c12c00]] | # Does not appear in BLASTP 2.0.5 attempt_read_and_call |
4 | 1 | [[#71b37b60]] | database_length |
4 | 2 | [[#71b37b60]] | effective_database_length |
4 | 3 | [[#71b37b60]] | effective_search_space_used |
5 | 1 | [[#71b373e0]] | "[Ll]ength of \\s*[Dd]atabase" |
5 | 2 | [[#71b373e0]] | "[Ee]ffective length of \\s*[Dd]atabase" |
5 | 3 | [[#71b373e0]] | "[Ee]ffective search space used" |