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Clone Mass | Clones in CloneSet | Parameter Count | Clone Similarity | Syntax Category [Sequence Length] |
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14 | 2 | 3 | 0.982 | compound_stmt |
Clone Abstraction | Parameter Bindings |
Clone Instance (Click to see clone) | Line Count | Source Line | Source File |
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1 | 14 | 14 | Bio/utils.py |
2 | 14 | 29 | Bio/utils.py |
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def translate(seq,id = None): "Translate a sequence (DEPRECATED)." import warnings warnings.warn("Bio.utils.translate() has been deprecated, and we"+" intend to remove it in a future release of Biopython."+" Please use the translate method or function in Bio.Seq"+" instead, as described in the Tutorial.",DeprecationWarning) if id is None: s = "translator" else: s = "translator.id.%d"%id translator = default_manager.resolve(seq.alphabet,s) return translator.translate(seq) |
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def translate_to_stop(seq,id = None): "Translate a sequence up to the first in frame stop codon (DEPRECATED)." import warnings warnings.warn("Bio.utils.translate_to_stop() has been deprecated, and we"+" intend to remove it in a future release of Biopython."+" Please use the translate method or function in Bio.Seq"+" instead, as described in the Tutorial.",DeprecationWarning) if id is None: s = "translator" else: s = "translator.id.%d"%id translator = default_manager.resolve(seq.alphabet,s) return translator.translate_to_stop(seq) |
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def [[#variable19feb180]](seq,id = None): [[#variable19feb100]] import warnings warnings.warn( [[#variable19feaea0]]+" intend to remove it in a future release of Biopython."+" Please use the translate method or function in Bio.Seq"+" instead, as described in the Tutorial.",DeprecationWarning) if id is None: s = "translator" else: s = "translator.id.%d"%id translator = default_manager.resolve(seq.alphabet,s) return translator. [[#variable19feb180]](seq) |
CloneAbstraction |
Parameter Index | Clone Instance | Parameter Name | Value |
---|---|---|---|
1 | 1 | [[#19feb180]] | translate_to_stop |
1 | 2 | [[#19feb180]] | translate |
2 | 1 | [[#19feb100]] | "Translate a sequence up to the first in frame stop codon (DEPRECATED)." |
2 | 2 | [[#19feb100]] | "Translate a sequence (DEPRECATED)." |
3 | 1 | [[#19feaea0]] | "Bio.utils.translate_to_stop() has been deprecated, and we" |
3 | 2 | [[#19feaea0]] | "Bio.utils.translate() has been deprecated, and we" |