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Clone Mass | Clones in CloneSet | Parameter Count | Clone Similarity | Syntax Category [Sequence Length] |
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6 | 2 | 5 | 0.976 | stmt_list[6] |
Clone Abstraction | Parameter Bindings |
Clone Instance (Click to see clone) | Line Count | Source Line | Source File |
---|---|---|---|
1 | 6 | 342 | Bio/AlignIO/ClustalIO.py |
2 | 6 | 356 | Bio/AlignIO/ClustalIO.py |
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alignments = list(ClustalIterator(StringIO(aln_example1))) assert 1==len(alignments) assert alignments[0]._version=="1.81" records = alignments[0].get_all_seqs( ) assert 2==len(records) assert records[0].id=="gi|4959044|gb|AAD34209.1|AF069" |
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alignments = list(ClustalIterator(StringIO(aln_example2))) assert 1==len(alignments) assert alignments[0]._version=="1.83" records = alignments[0].get_all_seqs( ) assert 9==len(records) assert records[ -1].id=="HISJ_E_COLI" |
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alignments = list(ClustalIterator(StringIO( [[#variable1ae4da00]]))) assert 1==len(alignments) assert alignments[0]._version== [[#variable2ff0a040]] records = alignments[0].get_all_seqs( ) assert [[#variable2ff0a000]]==len(records) assert records[ [[#variable1a624680]]].id== [[#variable5c2f9500]] |
CloneAbstraction |
Parameter Index | Clone Instance | Parameter Name | Value |
---|---|---|---|
1 | 1 | [[#1ae4da00]] | aln_example1 |
1 | 2 | [[#1ae4da00]] | aln_example2 |
2 | 1 | [[#2ff0a040]] | "1.81" |
2 | 2 | [[#2ff0a040]] | "1.83" |
3 | 1 | [[#2ff0a000]] | 2 |
3 | 2 | [[#2ff0a000]] | 9 |
4 | 1 | [[#1a624680]] | 0 |
4 | 2 | [[#1a624680]] | -1 |
5 | 1 | [[#5c2f9500]] | "gi|4959044|gb|AAD34209.1|AF069" |
5 | 2 | [[#5c2f9500]] | "HISJ_E_COLI" |