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| Clone Mass | Clones in CloneSet | Parameter Count | Clone Similarity | Syntax Category [Sequence Length] |
|---|---|---|---|---|
| 8 | 2 | 4 | 0.984 | or_test |
| Clone Abstraction | Parameter Bindings |
| Clone Instance (Click to see clone) | Line Count | Source Line | Source File |
|---|---|---|---|
| 1 | 8 | 187 | Bio/Align/Applications/_Clustalw.py |
| 2 | 8 | 229 | Bio/Align/Applications/_Clustalw.py |
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# ***Slow Pairwise Alignments:***
_Option(["-pwmatrix","-PWMATRIX","PWMATRIX","pwmatrix"],["input"],
lambda x:x in ["BLOSUM","PAM","GONNET","ID","blosum","pam","gonnet","id"] or
os.path.exists(x),False,"Protein weight matrix=BLOSUM, PAM, GONNET, ID or filename",True)
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_Option(["-matrix","-MATRIX","MATRIX","matrix"],["input"],
lambda x:x in ["BLOSUM","PAM","GONNET","ID","blosum","pam","gonnet","id"] or
os.path.exists(x),False,"Protein weight matrix=BLOSUM, PAM, GONNET, ID or filename",True)
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# ***Slow Pairwise Alignments:*** _Option([ [[#variable71b1c780]], [[#variable71b1c720]], [[#variable71b1c6a0]], [[#variable71b1c640]]],["input"], lambda x:x in ["BLOSUM","PAM","GONNET","ID","blosum","pam","gonnet","id"] or os.path.exists(x),False,"Protein weight matrix=BLOSUM, PAM, GONNET, ID or filename",True) |
| CloneAbstraction |
| Parameter Index | Clone Instance | Parameter Name | Value |
|---|---|---|---|
| 1 | 1 | [[#71b1c780]] | "-matrix" |
| 1 | 2 | [[#71b1c780]] | "-pwmatrix" |
| 2 | 1 | [[#71b1c720]] | "-MATRIX" |
| 2 | 2 | [[#71b1c720]] | "-PWMATRIX" |
| 3 | 1 | [[#71b1c6a0]] | "MATRIX" |
| 3 | 2 | [[#71b1c6a0]] | "PWMATRIX" |
| 4 | 1 | [[#71b1c640]] | "matrix" |
| 4 | 2 | [[#71b1c640]] | "pwmatrix" |