CloneSet158

Bio/NeuralNetwork/Gene/Motif.py

Bio/NeuralNetwork/Gene/Signature.py

        min_count = min(seq_motifs.values( )) 
        max_count = max(seq_motifs.values( )) 

        # as long as we have some motifs present, normalize them
        # otherwise we'll just return 0 for everything 
        if max_count>0:  
            for motif in seq_motifs.keys( ):
                                           
                seq_motifs[motif] = (float(seq_motifs[motif]-min_count)/float(max_count)) 


        # return the relative motif counts in the specified order
            
        motif_amounts = [ ] 
        for motif in self._motifs: 
             motif_amounts.append(seq_motifs[motif]) 

        min_count = min(sequence_sigs.values( )) 
        max_count = max(sequence_sigs.values( )) 

        # as long as we have some signatures present, normalize them
        # otherwise we'll just return 0 for everything 
        if max_count>0:  
            for sig in sequence_sigs.keys( ):
                                            
                sequence_sigs[sig] = (float(sequence_sigs[sig]-min_count)/float(max_count)) 


        # return the relative signature info in the specified order
            
        sig_amounts = [ ] 
        for sig in self._signatures: 
             sig_amounts.append(sequence_sigs[sig]) 

min_count = min( [[#variable1742f0e0]].values( )) 
max_count = max( [[#variable1742f0e0]].values( )) 
# as long as we have some motifs present, normalize them
# as long as we have some signatures present, normalize them
# otherwise we'll just return 0 for everything 
if max_count>0:
  for [[#variable2e7b5040]]in [[#variable1742f0e0]].keys( ):
  
     [[#variable1742f0e0]][ [[#variable2e7b5040]]] = (float( [[#variable1742f0e0]][ [[#variable2e7b5040]]]-min_count)/float(max_count)) 
    # return the relative motif counts in the specified order
    # return the relative signature info in the specified order
  
 [[#variable1928d800]]= [ ] 
for [[#variable2e7b5040]]in self. [[#variable2e7b5fa0]]:
   [[#variable1928d800]].append( [[#variable1742f0e0]][ [[#variable2e7b5040]]]) 
 

seq_motifs 

sequence_sigs 

motif 

sig 

motif_amounts 

sig_amounts 

_motifs 

_signatures