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| Clone Mass | Clones in CloneSet | Parameter Count | Clone Similarity | Syntax Category [Sequence Length] |
|---|---|---|---|---|
| 5 | 5 | 4 | 0.967 | compound_stmt |
| Clone Abstraction | Parameter Bindings |
| Clone Instance (Click to see clone) | Line Count | Source Line | Source File |
|---|---|---|---|
| 1 | 5 | 205 | Bio/SeqIO/_index.py |
| 2 | 5 | 211 | Bio/SeqIO/_index.py |
| 3 | 5 | 217 | Bio/SeqIO/_index.py |
| 4 | 5 | 223 | Bio/SeqIO/_index.py |
| 5 | 5 | 229 | Bio/SeqIO/_index.py |
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class FastaDict(_SequentialSeqFileDict):
"Indexed dictionary like access to a FASTA file."
def __init__(self,filename,alphabet,key_function):
_SequentialSeqFileDict.__init__(self,filename,alphabet,key_function,"fasta",">")
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class QualDict(_SequentialSeqFileDict):
"Indexed dictionary like access to a QUAL file."
def __init__(self,filename,alphabet,key_function):
_SequentialSeqFileDict.__init__(self,filename,alphabet,key_function,"qual",">")
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class PirDict(_SequentialSeqFileDict):
"Indexed dictionary like access to a PIR/NBRF file."
def __init__(self,filename,alphabet,key_function):
_SequentialSeqFileDict.__init__(self,filename,alphabet,key_function,"pir",">..;")
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class PhdDict(_SequentialSeqFileDict):
"Indexed dictionary like access to a PHD (PHRED) file."
def __init__(self,filename,alphabet,key_function):
_SequentialSeqFileDict.__init__(self,filename,alphabet,key_function,"phd","BEGIN_SEQUENCE")
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class AceDict(_SequentialSeqFileDict):
"Indexed dictionary like access to an ACE file."
def __init__(self,filename,alphabet,key_function):
_SequentialSeqFileDict.__init__(self,filename,alphabet,key_function,"ace","CO ")
#######################################
# Fiddly indexers: GenBank, EMBL, ... #
#######################################
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class [[#variable753cee60]](_SequentialSeqFileDict):
[[#variable753ce920]]
def __init__(self,filename,alphabet,key_function):
_SequentialSeqFileDict.__init__(self,filename,alphabet,key_function, [[#variable71b504c0]], [[#variable71b503c0]])
#######################################
# Fiddly indexers: GenBank, EMBL, ... #
#######################################
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| CloneAbstraction |
| Parameter Index | Clone Instance | Parameter Name | Value |
|---|---|---|---|
| 1 | 1 | [[#753cee60]] | AceDict |
| 1 | 2 | [[#753cee60]] | PhdDict |
| 1 | 3 | [[#753cee60]] | PirDict |
| 1 | 4 | [[#753cee60]] | QualDict |
| 1 | 5 | [[#753cee60]] | FastaDict |
| 2 | 1 | [[#753ce920]] | "Indexed dictionary like access to an ACE file." |
| 2 | 2 | [[#753ce920]] | "Indexed dictionary like access to a PHD (PHRED) file." |
| 2 | 3 | [[#753ce920]] | "Indexed dictionary like access to a PIR/NBRF file." |
| 2 | 4 | [[#753ce920]] | "Indexed dictionary like access to a QUAL file." |
| 2 | 5 | [[#753ce920]] | "Indexed dictionary like access to a FASTA file." |
| 3 | 1 | [[#71b504c0]] | "ace" |
| 3 | 2 | [[#71b504c0]] | "phd" |
| 3 | 3 | [[#71b504c0]] | "pir" |
| 3 | 4 | [[#71b504c0]] | "qual" |
| 3 | 5 | [[#71b504c0]] | "fasta" |
| 4 | 1 | [[#71b503c0]] | "CO " |
| 4 | 2 | [[#71b503c0]] | "BEGIN_SEQUENCE" |
| 4 | 3 | [[#71b503c0]] | ">..;" |
| 4 | 4 | [[#71b503c0]] | ">" |
| 4 | 5 | [[#71b503c0]] | ">" |