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Clone Mass | Clones in CloneSet | Parameter Count | Clone Similarity | Syntax Category [Sequence Length] |
---|---|---|---|---|
18 | 3 | 6 | 0.975 | simple_stmt |
Clone Abstraction | Parameter Bindings |
Clone Instance (Click to see clone) | Line Count | Source Line | Source File |
---|---|---|---|
1 | 18 | 264 | Bio/Data/CodonTable.py |
2 | 19 | 417 | Bio/Data/CodonTable.py |
3 | 18 | 437 | Bio/Data/CodonTable.py |
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register_ncbi_table(name = "Standard",alt_name = "SGC0",id = 1,table = {"TTT":"F","TTC":"F","TTA":"L","TTG":"L","TCT":"S","TCC":"S","TCA":"S","TCG":"S","TAT":"Y","TAC":"Y","TGT":"C","TGC":"C","TGG":"W","CTT":"L","CTC":"L","CTA":"L","CTG":"L","CCT":"P","CCC":"P","CCA":"P","CCG":"P","CAT":"H","CAC":"H","CAA":"Q","CAG":"Q","CGT":"R","CGC":"R","CGA":"R","CGG":"R","ATT":"I","ATC":"I","ATA":"I","ATG":"M","ACT":"T","ACC":"T","ACA":"T","ACG":"T","AAT":"N","AAC":"N","AAA":"K","AAG":"K","AGT":"S","AGC":"S","AGA":"R","AGG":"R","GTT":"V","GTC":"V","GTA":"V","GTG":"V","GCT":"A","GCC":"A","GCA":"A","GCG":"A","GAT":"D","GAC":"D","GAA":"E","GAG":"E","GGT":"G","GGC":"G","GGA":"G","GGG":"G", },stop_codons = ["TAA","TAG","TGA", ],start_codons = ["TTG","CTG","ATG", ]) |
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register_ncbi_table(name = "Bacterial",alt_name = None,id = 11,table = {"TTT":"F","TTC":"F","TTA":"L","TTG":"L","TCT":"S","TCC":"S","TCA":"S","TCG":"S","TAT":"Y","TAC":"Y","TGT":"C","TGC":"C","TGG":"W","CTT":"L","CTC":"L","CTA":"L","CTG":"L","CCT":"P","CCC":"P","CCA":"P","CCG":"P","CAT":"H","CAC":"H","CAA":"Q","CAG":"Q","CGT":"R","CGC":"R","CGA":"R","CGG":"R","ATT":"I","ATC":"I","ATA":"I","ATG":"M","ACT":"T","ACC":"T","ACA":"T","ACG":"T","AAT":"N","AAC":"N","AAA":"K","AAG":"K","AGT":"S","AGC":"S","AGA":"R","AGG":"R","GTT":"V","GTC":"V","GTA":"V","GTG":"V","GCT":"A","GCC":"A","GCA":"A","GCG":"A","GAT":"D","GAC":"D","GAA":"E","GAG":"E","GGT":"G","GGC":"G","GGA":"G","GGG":"G", },stop_codons = ["TAA","TAG","TGA", ],start_codons = ["TTG","CTG","ATT","ATC","ATA","ATG","GTG", ]) |
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register_ncbi_table(name = "Alternative Yeast Nuclear",alt_name = None,id = 12,table = {"TTT":"F","TTC":"F","TTA":"L","TTG":"L","TCT":"S","TCC":"S","TCA":"S","TCG":"S","TAT":"Y","TAC":"Y","TGT":"C","TGC":"C","TGG":"W","CTT":"L","CTC":"L","CTA":"L","CTG":"S","CCT":"P","CCC":"P","CCA":"P","CCG":"P","CAT":"H","CAC":"H","CAA":"Q","CAG":"Q","CGT":"R","CGC":"R","CGA":"R","CGG":"R","ATT":"I","ATC":"I","ATA":"I","ATG":"M","ACT":"T","ACC":"T","ACA":"T","ACG":"T","AAT":"N","AAC":"N","AAA":"K","AAG":"K","AGT":"S","AGC":"S","AGA":"R","AGG":"R","GTT":"V","GTC":"V","GTA":"V","GTG":"V","GCT":"A","GCC":"A","GCA":"A","GCG":"A","GAT":"D","GAC":"D","GAA":"E","GAG":"E","GGT":"G","GGC":"G","GGA":"G","GGG":"G", },stop_codons = ["TAA","TAG","TGA", ],start_codons = ["CTG","ATG", ]) |
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register_ncbi_table(name = [[#variable5d6d3340]],alt_name = [[#variable5d6d32e0]],id = [[#variable5d6d3240]],table = {"TTT":"F","TTC":"F","TTA":"L","TTG":"L","TCT":"S","TCC":"S","TCA":"S","TCG":"S","TAT":"Y","TAC":"Y","TGT":"C","TGC":"C","TGG":"W","CTT":"L","CTC":"L","CTA":"L","CTG": [[#variable5d6d3180]],"CCT":"P","CCC":"P","CCA":"P","CCG":"P","CAT":"H","CAC":"H","CAA":"Q","CAG":"Q","CGT":"R","CGC":"R","CGA":"R","CGG":"R","ATT":"I","ATC":"I","ATA":"I","ATG":"M","ACT":"T","ACC":"T","ACA":"T","ACG":"T","AAT":"N","AAC":"N","AAA":"K","AAG":"K","AGT":"S","AGC":"S","AGA":"R","AGG":"R","GTT":"V","GTC":"V","GTA":"V","GTG":"V","GCT":"A","GCC":"A","GCA":"A","GCG":"A","GAT":"D","GAC":"D","GAA":"E","GAG":"E","GGT":"G","GGC":"G","GGA":"G","GGG":"G", },stop_codons = ["TAA","TAG","TGA", ],start_codons = [ [[#variable5d6d31a0]], [[#variable5d6d3120]], ]) |
CloneAbstraction |
Parameter Index | Clone Instance | Parameter Name | Value |
---|---|---|---|
1 | 1 | [[#5d6d3340]] | "Standard" |
1 | 2 | [[#5d6d3340]] | "Bacterial" |
1 | 3 | [[#5d6d3340]] | "Alternative Yeast Nuclear" |
2 | 1 | [[#5d6d32e0]] | "SGC0" |
2 | 2 | [[#5d6d32e0]] | None |
2 | 3 | [[#5d6d32e0]] | None |
3 | 1 | [[#5d6d3240]] | 1 |
3 | 2 | [[#5d6d3240]] | 11 |
3 | 3 | [[#5d6d3240]] | 12 |
4 | 1 | [[#5d6d3180]] | "L" |
4 | 2 | [[#5d6d3180]] | "L" |
4 | 3 | [[#5d6d3180]] | "S" |
5 | 1 | [[#5d6d31a0]] | "TTG","CTG" |
5 | 2 | [[#5d6d31a0]] | "TTG","CTG","ATT","ATC","ATA","ATG" |
5 | 3 | [[#5d6d31a0]] | "CTG" |
6 | 1 | [[#5d6d3120]] | "ATG" |
6 | 2 | [[#5d6d3120]] | "GTG" |
6 | 3 | [[#5d6d3120]] | "ATG" |