| Previous CloneSet | Next CloneSet | Back to Main Report |
| Clone Mass | Clones in CloneSet | Parameter Count | Clone Similarity | Syntax Category [Sequence Length] |
|---|---|---|---|---|
| 14 | 4 | 4 | 0.978 | compound_stmt |
| Clone Abstraction | Parameter Bindings |
| Clone Instance (Click to see clone) | Line Count | Source Line | Source File |
|---|---|---|---|
| 1 | 14 | 91 | Bio/AlignAce/Parser.py |
| 2 | 13 | 752 | Bio/Blast/NCBIStandalone.py |
| 3 | 13 | 766 | Bio/Blast/NCBIStandalone.py |
| 4 | 14 | 166 | Bio/Motif/Parsers/AlignAce.py |
| ||||
class CompareAceParser(AbstractParser):
"""Parses CompareAce output to usable form
### so far only in a very limited way
"""
def __init__(self):
"__init__(self)"
self._scanner = CompareAceScanner( )
self._consumer = CompareAceConsumer( )
def parse(self,handle):
"parse(self, handle)"
self._scanner.feed(handle,self._consumer)
return self._consumer.data
|
| ||||
class BlastParser(AbstractParser):
"""Parses BLAST data into a Record.Blast object.
"""
def __init__(self):
"__init__(self)"
self._scanner = _Scanner( )
self._consumer = _BlastConsumer( )
def parse(self,handle):
"parse(self, handle)"
self._scanner.feed(handle,self._consumer)
return self._consumer.data
|
| ||||
class PSIBlastParser(AbstractParser):
"""Parses BLAST data into a Record.PSIBlast object.
"""
def __init__(self):
"__init__(self)"
self._scanner = _Scanner( )
self._consumer = _PSIBlastConsumer( )
def parse(self,handle):
"parse(self, handle)"
self._scanner.feed(handle,self._consumer)
return self._consumer.data
|
| ||||
class CompareAceParser(AbstractParser):
"""Parses CompareAce output to usable form
### so far only in a very limited way
"""
def __init__(self):
"__init__(self)"
self._scanner = CompareAceScanner( )
self._consumer = CompareAceConsumer( )
def parse(self,handle):
"parse(self, handle)"
self._scanner.feed(handle,self._consumer)
return self._consumer.data
|
| |||
class [[#variable78092dc0]](AbstractParser):
[[#variable2f2c9ec0]]
def __init__(self):
"__init__(self)"
self._scanner = [[#variable2f2c9ce0]]( )
self._consumer = [[#variable2f2c9c00]]( )
def parse(self,handle):
"parse(self, handle)"
self._scanner.feed(handle,self._consumer)
return self._consumer.data
|
| CloneAbstraction |
| Parameter Index | Clone Instance | Parameter Name | Value |
|---|---|---|---|
| 1 | 1 | [[#78092dc0]] | CompareAceParser |
| 1 | 2 | [[#78092dc0]] | PSIBlastParser |
| 1 | 3 | [[#78092dc0]] | BlastParser |
| 1 | 4 | [[#78092dc0]] | CompareAceParser |
| 2 | 1 | [[#2f2c9ec0]] | """Parses CompareAce output to usable form
### so far only in a very limited way
""" |
| 2 | 2 | [[#2f2c9ec0]] | """Parses BLAST data into a Record.PSIBlast object.
""" |
| 2 | 3 | [[#2f2c9ec0]] | """Parses BLAST data into a Record.Blast object.
""" |
| 2 | 4 | [[#2f2c9ec0]] | """Parses CompareAce output to usable form
### so far only in a very limited way
""" |
| 3 | 1 | [[#2f2c9ce0]] | CompareAceScanner |
| 3 | 2 | [[#2f2c9ce0]] | _Scanner |
| 3 | 3 | [[#2f2c9ce0]] | _Scanner |
| 3 | 4 | [[#2f2c9ce0]] | CompareAceScanner |
| 4 | 1 | [[#2f2c9c00]] | CompareAceConsumer |
| 4 | 2 | [[#2f2c9c00]] | _PSIBlastConsumer |
| 4 | 3 | [[#2f2c9c00]] | _BlastConsumer |
| 4 | 4 | [[#2f2c9c00]] | CompareAceConsumer |