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Clone Mass | Clones in CloneSet | Parameter Count | Clone Similarity | Syntax Category [Sequence Length] |
---|---|---|---|---|
5 | 5 | 6 | 0.952 | block |
Clone Abstraction | Parameter Bindings |
Clone Instance (Click to see clone) | Line Count | Source Line | Source File |
---|---|---|---|
1 | 4 | 1287 | Bio/Blast/NCBIStandalone.py |
2 | 5 | 1292 | Bio/Blast/NCBIStandalone.py |
3 | 5 | 1298 | Bio/Blast/NCBIStandalone.py |
4 | 5 | 1319 | Bio/Blast/NCBIStandalone.py |
5 | 5 | 1343 | Bio/Blast/NCBIStandalone.py |
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self._params.hsps_no_gap, = _get_cols(line,( -1, ),ncols = 9,expected = {3:"better",7:"gapping:"}) self._params.hsps_no_gap = _safe_int(self._params.hsps_no_gap) |
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self._params.hsps_prelim_gapped, = _get_cols(line,( -1, ),ncols = 9,expected = {4:"gapped",6:"prelim"}) self._params.hsps_prelim_gapped = _safe_int(self._params.hsps_prelim_gapped) |
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self._params.hsps_prelim_gapped_attempted, = _get_cols(line,( -1, ),ncols = 10,expected = {4:"attempted",7:"prelim"}) self._params.hsps_prelim_gapped_attempted = _safe_int(self._params.hsps_prelim_gapped_attempted) |
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self._params.effective_hsp_length, = _get_cols(line,( -1, ),ncols = 4,expected = {1:"HSP",2:"length:"}) self._params.effective_hsp_length = _safe_int(self._params.effective_hsp_length) |
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self._params.effective_search_space_used, = _get_cols(line,( -1, ),ncols = 5,expected = {1:"search",3:"used:"}) self._params.effective_search_space_used = _safe_int(self._params.effective_search_space_used) |
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self._params. [[#variable77a2aba0]], = _get_cols(line,( -1, ),ncols = [[#variable77a2ab20]],expected = { [[#variable77a2aa80]]: [[#variable77a2aa00]], [[#variable77a2a980]]: [[#variable77a2a920]]}) self._params. [[#variable77a2aba0]]= _safe_int(self._params. [[#variable77a2aba0]]) |
CloneAbstraction |
Parameter Index | Clone Instance | Parameter Name | Value |
---|---|---|---|
1 | 1 | [[#77a2aba0]] | effective_search_space_used |
1 | 2 | [[#77a2aba0]] | effective_hsp_length |
1 | 3 | [[#77a2aba0]] | hsps_prelim_gapped_attempted |
1 | 4 | [[#77a2aba0]] | hsps_prelim_gapped |
1 | 5 | [[#77a2aba0]] | hsps_no_gap |
2 | 1 | [[#77a2ab20]] | 5 |
2 | 2 | [[#77a2ab20]] | 4 |
2 | 3 | [[#77a2ab20]] | 10 |
2 | 4 | [[#77a2ab20]] | 9 |
2 | 5 | [[#77a2ab20]] | 9 |
3 | 1 | [[#77a2aa80]] | 1 |
3 | 2 | [[#77a2aa80]] | 1 |
3 | 3 | [[#77a2aa80]] | 4 |
3 | 4 | [[#77a2aa80]] | 4 |
3 | 5 | [[#77a2aa80]] | 3 |
4 | 1 | [[#77a2aa00]] | "search" |
4 | 2 | [[#77a2aa00]] | "HSP" |
4 | 3 | [[#77a2aa00]] | "attempted" |
4 | 4 | [[#77a2aa00]] | "gapped" |
4 | 5 | [[#77a2aa00]] | "better" |
5 | 1 | [[#77a2a980]] | 3 |
5 | 2 | [[#77a2a980]] | 2 |
5 | 3 | [[#77a2a980]] | 7 |
5 | 4 | [[#77a2a980]] | 6 |
5 | 5 | [[#77a2a980]] | 7 |
6 | 1 | [[#77a2a920]] | "used:" |
6 | 2 | [[#77a2a920]] | "length:" |
6 | 3 | [[#77a2a920]] | "prelim" |
6 | 4 | [[#77a2a920]] | "prelim" |
6 | 5 | [[#77a2a920]] | "gapping:" |