| Previous CloneSet | Next CloneSet | Back to Main Report |
| Clone Mass | Clones in CloneSet | Parameter Count | Clone Similarity | Syntax Category [Sequence Length] |
|---|---|---|---|---|
| 14 | 2 | 5 | 0.964 | stmt_list[4] |
| Clone Abstraction | Parameter Bindings |
| Clone Instance (Click to see clone) | Line Count | Source Line | Source File |
|---|---|---|---|
| 1 | 14 | 501 | Bio/pairwise2.py |
| 2 | 14 | 517 | Bio/pairwise2.py |
| ||||
# Update the cached column scores. The best score for
# this can come from either extending the gap in the
# previous cached score, or opening a new gap from the
# most previously seen character. Compare the two scores
# and keep the best one.
open_score = score_matrix[row-1][col-1]+first_B_gap
extend_score = col_cache_score[col-1]+extend_B
open_score_rint,extend_score_rint =
rint(open_score),rint(extend_score)
if open_score_rint>extend_score_rint:
col_cache_score[col-1] = open_score
col_cache_index[col-1] = [(row-1,col-1)]
elif extend_score_rint>open_score_rint:
col_cache_score[col-1] = extend_score
else:
col_cache_score[col-1] = open_score
if (row-1,col-1) not in col_cache_index[col-1]:
col_cache_index[col-1] = col_cache_index[col-1]+[(row-1,col-1)]
# Update the cached row scores.
|
| ||||
open_score = score_matrix[row-1][col-1]+first_A_gap
extend_score = row_cache_score[row-1]+extend_A
open_score_rint,extend_score_rint =
rint(open_score),rint(extend_score)
if open_score_rint>extend_score_rint:
row_cache_score[row-1] = open_score
row_cache_index[row-1] = [(row-1,col-1)]
elif extend_score_rint>open_score_rint:
row_cache_score[row-1] = extend_score
else:
row_cache_score[row-1] = open_score
if (row-1,col-1) not in row_cache_index[row-1]:
row_cache_index[row-1] = row_cache_index[row-1]+[(row-1,col-1)]
|
| |||
# Update the cached column scores. The best score for
# this can come from either extending the gap in the
# previous cached score, or opening a new gap from the
# most previously seen character. Compare the two scores
# and keep the best one.
open_score = score_matrix[row-1][col-1]+ [[#variable77487620]]
extend_score = [[#variable77d34b60]][ [[#variable60ce9980]]-1]+ [[#variable78048fe0]]
open_score_rint,extend_score_rint = rint(open_score),rint(extend_score)
if open_score_rint>extend_score_rint:
[[#variable77d34b60]][ [[#variable60ce9980]]-1] = open_score
[[#variable78049020]][ [[#variable60ce9980]]-1] = [(row-1,col-1)]
elif extend_score_rint>open_score_rint:
[[#variable77d34b60]][ [[#variable60ce9980]]-1] = extend_score
else:
[[#variable77d34b60]][ [[#variable60ce9980]]-1] = open_score
if (row-1,col-1) not in [[#variable78049020]][ [[#variable60ce9980]]-1]:
[[#variable78049020]][ [[#variable60ce9980]]-1] = [[#variable78049020]][ [[#variable60ce9980]]-1]+[(row-1,col-1)]
# Update the cached row scores.
|
| CloneAbstraction |
| Parameter Index | Clone Instance | Parameter Name | Value |
|---|---|---|---|
| 1 | 1 | [[#77487620]] | first_A_gap |
| 1 | 2 | [[#77487620]] | first_B_gap |
| 2 | 1 | [[#77d34b60]] | row_cache_score |
| 2 | 2 | [[#77d34b60]] | col_cache_score |
| 3 | 1 | [[#60ce9980]] | row |
| 3 | 2 | [[#60ce9980]] | col |
| 4 | 1 | [[#78048fe0]] | extend_A |
| 4 | 2 | [[#78048fe0]] | extend_B |
| 5 | 1 | [[#78049020]] | row_cache_index |
| 5 | 2 | [[#78049020]] | col_cache_index |