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Clone Mass | Clones in CloneSet | Parameter Count | Clone Similarity | Syntax Category [Sequence Length] |
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7 | 4 | 5 | 0.971 | compound_stmt |
Clone Abstraction | Parameter Bindings |
Clone Instance (Click to see clone) | Line Count | Source Line | Source File |
---|---|---|---|
1 | 7 | 1249 | Bio/Blast/NCBIStandalone.py |
2 | 7 | 1257 | Bio/Blast/NCBIStandalone.py |
3 | 7 | 1265 | Bio/Blast/NCBIStandalone.py |
4 | 7 | 1273 | Bio/Blast/NCBIStandalone.py |
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def num_hits(self,line): if line.find("1st pass")!= -1: x, = _get_cols(line,( -4, ),ncols = 11,expected = {2:"Hits"}) self._params.num_hits = _safe_int(x) else: x, = _get_cols(line,( -1, ),ncols = 6,expected = {2:"Hits"}) self._params.num_hits = _safe_int(x) |
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def num_sequences(self,line): if line.find("1st pass")!= -1: x, = _get_cols(line,( -4, ),ncols = 9,expected = {2:"Sequences:"}) self._params.num_sequences = _safe_int(x) else: x, = _get_cols(line,( -1, ),ncols = 4,expected = {2:"Sequences:"}) self._params.num_sequences = _safe_int(x) |
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def num_extends(self,line): if line.find("1st pass")!= -1: x, = _get_cols(line,( -4, ),ncols = 9,expected = {2:"extensions:"}) self._params.num_extends = _safe_int(x) else: x, = _get_cols(line,( -1, ),ncols = 4,expected = {2:"extensions:"}) self._params.num_extends = _safe_int(x) |
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def num_good_extends(self,line): if line.find("1st pass")!= -1: x, = _get_cols(line,( -4, ),ncols = 10,expected = {3:"extensions:"}) self._params.num_good_extends = _safe_int(x) else: x, = _get_cols(line,( -1, ),ncols = 5,expected = {3:"extensions:"}) self._params.num_good_extends = _safe_int(x) |
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def [[#variable77428120]](self,line): if line.find("1st pass")!= -1: x, = _get_cols(line,( -4, ),ncols = [[#variable5d745ec0]],expected = { [[#variable17f5d200]]: [[#variable77428100]]}) self._params. [[#variable77428120]]= _safe_int(x) else: x, = _get_cols(line,( -1, ),ncols = [[#variable77428160]],expected = { [[#variable17f5d200]]: [[#variable77428100]]}) self._params. [[#variable77428120]]= _safe_int(x) |
CloneAbstraction |
Parameter Index | Clone Instance | Parameter Name | Value |
---|---|---|---|
1 | 1 | [[#77428120]] | num_good_extends |
1 | 2 | [[#77428120]] | num_extends |
1 | 3 | [[#77428120]] | num_sequences |
1 | 4 | [[#77428120]] | num_hits |
2 | 1 | [[#5d745ec0]] | 10 |
2 | 2 | [[#5d745ec0]] | 9 |
2 | 3 | [[#5d745ec0]] | 9 |
2 | 4 | [[#5d745ec0]] | 11 |
3 | 1 | [[#17f5d200]] | 3 |
3 | 2 | [[#17f5d200]] | 2 |
3 | 3 | [[#17f5d200]] | 2 |
3 | 4 | [[#17f5d200]] | 2 |
4 | 1 | [[#77428100]] | "extensions:" |
4 | 2 | [[#77428100]] | "extensions:" |
4 | 3 | [[#77428100]] | "Sequences:" |
4 | 4 | [[#77428100]] | "Hits" |
5 | 1 | [[#77428160]] | 5 |
5 | 2 | [[#77428160]] | 4 |
5 | 3 | [[#77428160]] | 4 |
5 | 4 | [[#77428160]] | 6 |