CloneSet53


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Clone
Mass
Clones in
CloneSet
Parameter
Count
Clone
Similarity
Syntax Category
[Sequence Length]
7450.971compound_stmt
Clone AbstractionParameter Bindings
Clone Instance
(Click to see clone)
Line CountSource Line
Source File
171249
Bio/Blast/NCBIStandalone.py
271257
Bio/Blast/NCBIStandalone.py
371265
Bio/Blast/NCBIStandalone.py
471273
Bio/Blast/NCBIStandalone.py
Clone Instance
1
Line Count
7
Source Line
1249
Source File
Bio/Blast/NCBIStandalone.py

    def num_hits(self,line): 
        if line.find("1st pass")!=  -1: 
             x, = _get_cols(line,( -4, ),ncols = 11,expected = {2:"Hits"}) 
             self._params.num_hits = _safe_int(x) 
        else: 
             x, = _get_cols(line,( -1, ),ncols = 6,expected = {2:"Hits"}) 
             self._params.num_hits = _safe_int(x) 
        


Clone Instance
2
Line Count
7
Source Line
1257
Source File
Bio/Blast/NCBIStandalone.py

    def num_sequences(self,line): 
        if line.find("1st pass")!=  -1: 
             x, = _get_cols(line,( -4, ),ncols = 9,expected = {2:"Sequences:"}) 
             self._params.num_sequences = _safe_int(x) 
        else: 
             x, = _get_cols(line,( -1, ),ncols = 4,expected = {2:"Sequences:"}) 
             self._params.num_sequences = _safe_int(x) 
        


Clone Instance
3
Line Count
7
Source Line
1265
Source File
Bio/Blast/NCBIStandalone.py

    def num_extends(self,line): 
        if line.find("1st pass")!=  -1: 
             x, = _get_cols(line,( -4, ),ncols = 9,expected = {2:"extensions:"}) 
             self._params.num_extends = _safe_int(x) 
        else: 
             x, = _get_cols(line,( -1, ),ncols = 4,expected = {2:"extensions:"}) 
             self._params.num_extends = _safe_int(x) 
        


Clone Instance
4
Line Count
7
Source Line
1273
Source File
Bio/Blast/NCBIStandalone.py

    def num_good_extends(self,line): 
        if line.find("1st pass")!=  -1: 
             x, = _get_cols(line,( -4, ),ncols = 10,expected = {3:"extensions:"}) 
             self._params.num_good_extends = _safe_int(x) 
        else: 
             x, = _get_cols(line,( -1, ),ncols = 5,expected = {3:"extensions:"}) 
             self._params.num_good_extends = _safe_int(x) 
        


Clone AbstractionParameter Count: 5Parameter Bindings

def [[#variable77428120]](self,line):
  if line.find("1st pass")!= -1:
  
    x, = _get_cols(line,( -4, ),ncols = [[#variable5d745ec0]],expected = { [[#variable17f5d200]]: [[#variable77428100]]}) 
    self._params. [[#variable77428120]]= _safe_int(x) 
  else:
  
    x, = _get_cols(line,( -1, ),ncols = [[#variable77428160]],expected = { [[#variable17f5d200]]: [[#variable77428100]]}) 
    self._params. [[#variable77428120]]= _safe_int(x) 
  
 

CloneAbstraction
Parameter Bindings
Parameter
Index
Clone
Instance
Parameter
Name
Value
11[[#77428120]]
num_good_extends 
12[[#77428120]]
num_extends 
13[[#77428120]]
num_sequences 
14[[#77428120]]
num_hits 
21[[#5d745ec0]]
10 
22[[#5d745ec0]]
9 
23[[#5d745ec0]]
9 
24[[#5d745ec0]]
11 
31[[#17f5d200]]
3 
32[[#17f5d200]]
2 
33[[#17f5d200]]
2 
34[[#17f5d200]]
2 
41[[#77428100]]
"extensions:" 
42[[#77428100]]
"extensions:" 
43[[#77428100]]
"Sequences:" 
44[[#77428100]]
"Hits" 
51[[#77428160]]
5 
52[[#77428160]]
4 
53[[#77428160]]
4 
54[[#77428160]]
6