CloneSet47


Clone Mass	Clones in CloneSet	Parameter Count	Clone Similarity	Syntax Category [Sequence Length]
29	3	2	0.995	stmt_list[5]

Clone Abstraction

Parameter Bindings

Clone Instance (Click to see clone)	Line Count	Source Line	Source File
1	29	228	Bio/Prosite/__init__.py
2	29	117	Bio/Prosite/Prodoc.py
3	29	173	Bio/SwissProt/SProt.py

Clone Instance
1

Line Count
29

Source Line
228

Source File

Bio/Prosite/__init__.py

    __filename_key = "__filename" 

    def __init__(self,indexname,parser = None): 
         """__init__(self, indexname, parser=None)

        Open a Prosite Dictionary.  indexname is the name of the
        index for the dictionary.  The index should have been created
        using the index_file function.  parser is an optional Parser
        object to change the results into another form.  If set to None,
        then the raw contents of the file will be returned.

        """ 
         self._index = Index.Index(indexname) 
         self._handle = open(self._index[Dictionary.__filename_key]) 
         self._parser = parser 

    def __len__(self): 
         return len(self._index) 

    def __getitem__(self,key): 
        start,len =  self._index[key] 
        self._handle.seek(start) 
        data = self._handle.read(len) 
        if self._parser is not None: 
             return self._parser.parse(File.StringHandle(data)) 
        return data 

    def __getattr__(self,name): 
        return getattr(self._index,name)

Clone Instance
2

Line Count
29

Source Line
117

Source File

Bio/Prosite/Prodoc.py

    __filename_key = "__filename" 

    def __init__(self,indexname,parser = None): 
         """__init__(self, indexname, parser=None)

        Open a Prodoc Dictionary.  indexname is the name of the
        index for the dictionary.  The index should have been created
        using the index_file function.  parser is an optional Parser
        object to change the results into another form.  If set to None,
        then the raw contents of the file will be returned.

        """ 
         self._index = Index.Index(indexname) 
         self._handle = open(self._index[Dictionary.__filename_key]) 
         self._parser = parser 

    def __len__(self): 
         return len(self._index) 

    def __getitem__(self,key): 
        start,len =  self._index[key] 
        self._handle.seek(start) 
        data = self._handle.read(len) 
        if self._parser is not None: 
             return self._parser.parse(File.StringHandle(data)) 
        return data 

    def __getattr__(self,name): 
        return getattr(self._index,name)

Clone Instance
3

Line Count
29

Source Line
173

Source File

Bio/SwissProt/SProt.py

    __filename_key = "__filename" 

    def __init__(self,indexname,parser = None): 
         """__init__(self, indexname, parser=None)

        Open a SwissProt Dictionary.  indexname is the name of the
        index for the dictionary.  The index should have been created
        using the index_file function.  parser is an optional Parser
        object to change the results into another form.  If set to None,
        then the raw contents of the file will be returned.

        """ 
         self._index = Index.Index(indexname) 
         self._handle = open(self._index[self.__filename_key]) 
         self._parser = parser 

    def __len__(self): 
         return len(self._index) 

    def __getitem__(self,key): 
        start,len =  self._index[key] 
        self._handle.seek(start) 
        data = self._handle.read(len) 
        if self._parser is not None: 
             return self._parser.parse(File.StringHandle(data)) 
        return data 

    def __getattr__(self,name): 
        return getattr(self._index,name)

Clone Abstraction

Parameter Count: 2

Parameter Bindings

__filename_key = "__filename" 

def __init__(self,indexname,parser = None):
   [[#variable5fc109a0]]
  self._index = Index.Index(indexname) 
  self._handle = open(self._index[ [[#variable4f94e3a0]].__filename_key]) 
  self._parser = parser 

def __len__(self):
  return len(self._index) 

def __getitem__(self,key):
  start,len = self._index[key] 
  self._handle.seek(start) 
  data = self._handle.read(len) 
  if self._parser is not None:
  
    return self._parser.parse(File.StringHandle(data)) 
  return data 

def __getattr__(self,name):
  return getattr(self._index,name)

CloneAbstraction

Parameter Bindings
Parameter Index	Clone Instance	Parameter Name	Value
1	1	`[[#5fc109a0]]`	"""__init__(self, indexname, parser=None) Open a Prodoc Dictionary. indexname is the name of the index for the dictionary. The index should have been created using the index_file function. parser is an optional Parser object to change the results into another form. If set to None, then the raw contents of the file will be returned. """
1	2	`[[#5fc109a0]]`	"""__init__(self, indexname, parser=None) Open a Prosite Dictionary. indexname is the name of the index for the dictionary. The index should have been created using the index_file function. parser is an optional Parser object to change the results into another form. If set to None, then the raw contents of the file will be returned. """
1	3	`[[#5fc109a0]]`	"""__init__(self, indexname, parser=None) Open a SwissProt Dictionary. indexname is the name of the index for the dictionary. The index should have been created using the index_file function. parser is an optional Parser object to change the results into another form. If set to None, then the raw contents of the file will be returned. """
2	1	`[[#4f94e3a0]]`	Dictionary
2	2	`[[#4f94e3a0]]`	Dictionary
2	3	`[[#4f94e3a0]]`	self