CloneSet425


Clone Mass	Clones in CloneSet	Parameter Count	Clone Similarity	Syntax Category [Sequence Length]
6	2	0	1.000	compound_stmt

Clone Abstraction

Parameter Bindings

Clone Instance (Click to see clone)	Line Count	Source Line	Source File
1	6	422	Bio/AlignIO/__init__.py
2	6	823	Bio/SeqIO/__init__.py

Clone Instance
1

Line Count
6

Source Line
422

Source File

Bio/AlignIO/__init__.py

    #TODO - Add optimised versions of important conversions
    #For now just off load the work to SeqIO parse/write    
    if isinstance(in_file,basestring):  
        in_handle = open(in_file,"rU") 
        in_close = True 
    else: 
        in_handle = in_file 
        in_close = False 
    #This will check the arguments and issue error messages,

Clone Instance
2

Line Count
6

Source Line
823

Source File

Bio/SeqIO/__init__.py

    #TODO - Add optimised versions of important conversions
    #For now just off load the work to SeqIO parse/write    
    if isinstance(in_file,basestring):  
        in_handle = open(in_file,"rU") 
        in_close = True 
    else: 
        in_handle = in_file 
        in_close = False 
    #Don't open the output file until we've checked the input is OK?

Clone Abstraction

Parameter Count: 0

Parameter Bindings

#TODO - Add optimised versions of important conversions
#For now just off load the work to SeqIO parse/write    
if isinstance(in_file,basestring):
  in_handle = open(in_file,"rU") 
  in_close = True 
else:
  in_handle = in_file 
  in_close = False 
  #This will check the arguments and issue error messages,
  #Don't open the output file until we've checked the input is OK?

CloneAbstraction

Parameter Bindings
Parameter Index	Clone Instance	Parameter Name	Value
None