CloneSet41


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Clone
Mass
Clones in
CloneSet
Parameter
Count
Clone
Similarity
Syntax Category
[Sequence Length]
14460.972test_pair_plus
Clone AbstractionParameter Bindings
Clone Instance
(Click to see clone)
Line CountSource Line
Source File
114573
Bio/Restriction/Restriction_Dictionary.py
2141266
Bio/Restriction/Restriction_Dictionary.py
3143450
Bio/Restriction/Restriction_Dictionary.py
4149525
Bio/Restriction/Restriction_Dictionary.py
Clone Instance
1
Line Count
14
Source Line
573
Source File
Bio/Restriction/Restriction_Dictionary.py

          "charac":( -7, -25,25,7,"GAACNNNNNNTCC"),"compsite":"(?P<AloI>GAAC......TCC)|(?P<AloI_as>GGA......GTTC)","dna":None,"freq":16384,"fst3": -25,"fst5": -7,"inact_temp":65,"opt_temp":37,"ovhg":5,"ovhgseq":"NNNNN","results":None,"scd3":7,"scd5":25,"site":"GAACNNNNNNTCC"


Clone Instance
2
Line Count
14
Source Line
1266
Source File
Bio/Restriction/Restriction_Dictionary.py

          "charac":( -10, -26,23,7,"ACNNNNGTAYC"),"compsite":"(?P<BaeI>AC....GTA[CT]C)|(?P<BaeI_as>G[AG]TAC....GT)","dna":None,"freq":8192,"fst3": -26,"fst5": -10,"inact_temp":65,"opt_temp":37,"ovhg":5,"ovhgseq":"NNNNN","results":None,"scd3":7,"scd5":23,"site":"ACNNNNGTAYC"


Clone Instance
3
Line Count
14
Source Line
3450
Source File
Bio/Restriction/Restriction_Dictionary.py

            "charac":( -8, -25,24,7,"GACNNNNNNTGG"),"compsite":"(?P<Bsp24I>GAC......TGG)|(?P<Bsp24I_as>CCA......GTC)","dna":None,"freq":4096,"fst3": -25,"fst5": -8,"inact_temp":65,"opt_temp":37,"ovhg":5,"ovhgseq":"NNNNN","results":None,"scd3":7,"scd5":24,"site":"GACNNNNNNTGG"


Clone Instance
4
Line Count
14
Source Line
9525
Source File
Bio/Restriction/Restriction_Dictionary.py

          "charac":( -7, -25,25,7,"GAACNNNNNNTAC"),"compsite":"(?P<PsrI>GAAC......TAC)|(?P<PsrI_as>GTA......GTTC)","dna":None,"freq":16384,"fst3": -25,"fst5": -7,"inact_temp":65,"opt_temp":37,"ovhg":5,"ovhgseq":"NNNNN","results":None,"scd3":7,"scd5":25,"site":"GAACNNNNNNTAC"


Clone AbstractionParameter Count: 6Parameter Bindings

"charac":( - [[#variable7546ee00]], - [[#variable7546ed60]], [[#variable7546ecc0]],7, [[#variable7546ec60]]),"compsite": [[#variable7546ebe0]],"dna":None,"freq": [[#variable7546e7e0]],"fst3": - [[#variable7546ed60]],"fst5": - [[#variable7546ee00]],"inact_temp":65,"opt_temp":37,"ovhg":5,"ovhgseq":"NNNNN","results":None,"scd3":7,"scd5": [[#variable7546ecc0]],"site": [[#variable7546ec60]]
 

CloneAbstraction
Parameter Bindings
Parameter
Index
Clone
Instance
Parameter
Name
Value
11[[#7546ee00]]
7 
12[[#7546ee00]]
10 
13[[#7546ee00]]
8 
14[[#7546ee00]]
7 
21[[#7546ed60]]
25 
22[[#7546ed60]]
26 
23[[#7546ed60]]
25 
24[[#7546ed60]]
25 
31[[#7546ecc0]]
25 
32[[#7546ecc0]]
23 
33[[#7546ecc0]]
24 
34[[#7546ecc0]]
25 
41[[#7546ec60]]
"GAACNNNNNNTCC" 
42[[#7546ec60]]
"ACNNNNGTAYC" 
43[[#7546ec60]]
"GACNNNNNNTGG" 
44[[#7546ec60]]
"GAACNNNNNNTAC" 
51[[#7546ebe0]]
"(?P<AloI>GAAC......TCC)|(?P<AloI_as>GGA......GTTC)" 
52[[#7546ebe0]]
"(?P<BaeI>AC....GTA[CT]C)|(?P<BaeI_as>G[AG]TAC....GT)" 
53[[#7546ebe0]]
"(?P<Bsp24I>GAC......TGG)|(?P<Bsp24I_as>CCA......GTC)" 
54[[#7546ebe0]]
"(?P<PsrI>GAAC......TAC)|(?P<PsrI_as>GTA......GTTC)" 
61[[#7546e7e0]]
16384 
62[[#7546e7e0]]
8192 
63[[#7546e7e0]]
4096 
64[[#7546e7e0]]
16384