CloneSet383


Clone Mass	Clones in CloneSet	Parameter Count	Clone Similarity	Syntax Category [Sequence Length]
6	2	6	0.955	test_pair_plus

Clone Abstraction

Parameter Bindings

Clone Instance (Click to see clone)	Line Count	Source Line	Source File
1	6	1638	Bio/Blast/NCBIStandalone.py
2	6	1757	Bio/Blast/NCBIStandalone.py

Clone Instance
1

Line Count
6

Source Line
1638

Source File

Bio/Blast/NCBIStandalone.py

        "matrix":"-M","gap_open":"-G","gap_extend":"-E","nuc_match":"-r","nuc_mismatch":"-q","query_genetic_code":"-Q"

Clone Instance
2

Line Count
6

Source Line
1757

Source File

Bio/Blast/NCBIStandalone.py

        "matrix":"-M","gap_open":"-G","gap_extend":"-E","window_size":"-A","npasses":"-j","passes":"-P"

Clone Abstraction

Parameter Count: 6

Parameter Bindings

"matrix":"-M","gap_open":"-G","gap_extend":"-E", [[#variable5e4e3900]]: [[#variable5e4e3880]], [[#variable5e4e37e0]]: [[#variable5e4e3740]], [[#variable5e4e36a0]]: [[#variable5e4e3620]]

CloneAbstraction

Parameter Bindings
Parameter Index	Clone Instance	Parameter Name	Value
1	1	`[[#5e4e3900]]`	"nuc_match"
1	2	`[[#5e4e3900]]`	"window_size"
2	1	`[[#5e4e3880]]`	"-r"
2	2	`[[#5e4e3880]]`	"-A"
3	1	`[[#5e4e37e0]]`	"nuc_mismatch"
3	2	`[[#5e4e37e0]]`	"npasses"
4	1	`[[#5e4e3740]]`	"-q"
4	2	`[[#5e4e3740]]`	"-j"
5	1	`[[#5e4e36a0]]`	"query_genetic_code"
5	2	`[[#5e4e36a0]]`	"passes"
6	1	`[[#5e4e3620]]`	"-Q"
6	2	`[[#5e4e3620]]`	"-P"