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| Clone Mass | Clones in CloneSet | Parameter Count | Clone Similarity | Syntax Category [Sequence Length] |
|---|---|---|---|---|
| 34 | 2 | 5 | 0.963 | Python |
| Clone Abstraction | Parameter Bindings |
| Clone Instance (Click to see clone) | Line Count | Source Line | Source File |
|---|---|---|---|
| 1 | 28 | 1 | Bio/GA/Crossover/Point.py |
| 2 | 34 | 1 | Bio/GA/Crossover/TwoPoint.py |
| ||||
"""Perform two-point crossovers between the genomes of two organisms.
This module performs single-point crossover between two genomes.
SinglePointCrossover:
genome 1 -- A B C*D E F
genome 2 -- a b c*d e f
new genome 1 -- A B C d e f
new genome 2 -- a b c D E F
"""
# standard modules
from GeneralPoint import TwoCrossover
class SinglePointCrossover(TwoCrossover):
"""Perform point crossover between genomes at some defined rate.
This performs a crossover between two genomes at some defined
frequency. Length of genome is preserved, as the crossover
point is the same for either genome.
"""
def __init__(self,crossover_prob = .1):
"""Initialize to do crossovers at the specified probability.
\t"""
TwoCrossover.__init__(self,1,crossover_prob)
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| ||||
"""Perform two-point crossovers between the genomes of two organisms.
This module performs two-point crossover between two genomes.
There are two flavors: OnePointCrossover (Point) and TwoPointCrossover.
TwoPointCrossover is the minimal crossover technique that
facilitates diverse genome length. Do not use this if you need to
maintain consistent genome length.
TwoPointCrossover:
genome 1 -- A B*C D E F
genome 2 -- a b c*d e f
new genome 1 -- A B d e f
new genome 2 -- a b c C D E F
"""
# standard modules
from GeneralPoint import TwoCrossover
class TwoPointCrossover(TwoCrossover):
"""Perform two point crossover between genomes at some defined rate.
This performs a crossover between two genomes at some defined frequency.
The location of the points of crossover are chosen randomly if the
crossover meets the probability to occur.
"""
def __init__(self,crossover_prob = .1):
"""Initialize to do crossovers at the specified probability.
"""
TwoCrossover.__init__(self,2,crossover_prob)
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| |||
[[#variable6016e200]]
# standard modules
from GeneralPoint import TwoCrossover
class [[#variable6016e1c0]](TwoCrossover):
[[#variable61884e20]]
def __init__(self,crossover_prob = .1):
[[#variable6016e180]]
TwoCrossover.__init__(self, [[#variable6016e060]],crossover_prob)
|
| CloneAbstraction |
| Parameter Index | Clone Instance | Parameter Name | Value |
|---|---|---|---|
| 1 | 1 | [[#6016e200]] | """Perform two-point crossovers between the genomes of two organisms. This module performs two-point crossover between two genomes. There are two flavors: OnePointCrossover (Point) and TwoPointCrossover. TwoPointCrossover is the minimal crossover technique that facilitates diverse genome length. Do not use this if you need to maintain consistent genome length. TwoPointCrossover: genome 1 -- A B*C D E F genome 2 -- a b c*d e f new genome 1 -- A B d e f new genome 2 -- a b c C D E F """ |
| 1 | 2 | [[#6016e200]] | """Perform two-point crossovers between the genomes of two organisms. This module performs single-point crossover between two genomes. SinglePointCrossover: genome 1 -- A B C*D E F genome 2 -- a b c*d e f new genome 1 -- A B C d e f new genome 2 -- a b c D E F """ |
| 2 | 1 | [[#6016e1c0]] | TwoPointCrossover |
| 2 | 2 | [[#6016e1c0]] | SinglePointCrossover |
| 3 | 1 | [[#61884e20]] | """Perform two point crossover between genomes at some defined rate.
This performs a crossover between two genomes at some defined frequency.
The location of the points of crossover are chosen randomly if the
crossover meets the probability to occur.
""" |
| 3 | 2 | [[#61884e20]] | """Perform point crossover between genomes at some defined rate.
This performs a crossover between two genomes at some defined
frequency. Length of genome is preserved, as the crossover
point is the same for either genome.
""" |
| 4 | 1 | [[#6016e180]] | """Initialize to do crossovers at the specified probability.
""" |
| 4 | 2 | [[#6016e180]] | """Initialize to do crossovers at the specified probability. \t""" |
| 5 | 1 | [[#6016e060]] | 2 |
| 5 | 2 | [[#6016e060]] | 1 |