CloneSet211


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Clone
Mass
Clones in
CloneSet
Parameter
Count
Clone
Similarity
Syntax Category
[Sequence Length]
8220.991compound_stmt
Clone AbstractionParameter Bindings
Clone Instance
(Click to see clone)
Line CountSource Line
Source File
18142
Bio/AlignIO/ClustalIO.py
28218
Bio/AlignIO/ClustalIO.py
Clone Instance
1
Line Count
8
Source Line
142
Source File
Bio/AlignIO/ClustalIO.py

                if len(fields)==3:   
                    #This MAY be an old style file with a letter count...
                    try : 
                         letters = int(fields[2]) 
                    except ValueError: 
                        raise ValueError("""Could not parse line, bad sequence number:
%s"""                                    %line) 
                    if len(fields[1].replace("-",""))!=letters:   
                        raise ValueError("""Could not parse line, invalid sequence number:
%s"""                                    %line) 
                    


Clone Instance
2
Line Count
8
Source Line
218
Source File
Bio/AlignIO/ClustalIO.py

                if len(fields)==3:   
                    #This MAY be an old style file with a letter count...
                    try : 
                         letters = int(fields[2]) 
                    except ValueError: 
                        raise ValueError("""Could not parse line, bad sequence number:
%s"""                                    %line) 
                    if len(seqs[i].replace("-",""))!=letters:   
                        raise ValueError("""Could not parse line, invalid sequence number:
%s"""                                    %line) 
                #Read in the next line
                    


Clone AbstractionParameter Count: 2Parameter Bindings

if len(fields)==3:
  #This MAY be an old style file with a letter count...
  try :
  
    letters = int(fields[2]) 
  except ValueError:
  
    raise ValueError("""Could not parse line, bad sequence number:
%s"""                %line) 
  if len( [[#variable18fbbfa0]][ [[#variable18fbbf20]]].replace("-",""))!=letters:
  
    raise ValueError("""Could not parse line, invalid sequence number:
%s"""                %line) 
    #Read in the next line
  
 

CloneAbstraction
Parameter Bindings
Parameter
Index
Clone
Instance
Parameter
Name
Value
11[[#18fbbfa0]]
fields 
12[[#18fbbfa0]]
seqs 
21[[#18fbbf20]]
1 
22[[#18fbbf20]]
i