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Clone Mass | Clones in CloneSet | Parameter Count | Clone Similarity | Syntax Category [Sequence Length] |
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56 | 2 | 1 | 0.999 | compound_stmt |
Clone Abstraction | Parameter Bindings |
Clone Instance (Click to see clone) | Line Count | Source Line | Source File |
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1 | 56 | 218 | Bio/AlignAce/Motif.py |
2 | 54 | 612 | Bio/Motif/_Motif.py |
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def weblogo(self,fname,format = "PNG", **kwds): """ uses the Berkeley weblogo service to download and save a weblogo of itself requires an internet connection. The parameters from **kwds are passed directly to the weblogo server. """ import urllib import urllib2 #import Image al = self.to_fasta( ) url = "http://weblogo.berkeley.edu/logo.cgi" values = {"sequence":al,"format":format,"logowidth":"18","logoheight":"5","logounits":"cm","kind":"AUTO","firstnum":"1","command":"Create Logo","smallsamplecorrection":"on","symbolsperline":32,"res":"96","res_units":"ppi","antialias":"on","title":"","barbits":"","xaxis":"on","xaxis_label":"","yaxis":"on","yaxis_label":"","showends":"on","shrink":"0.5","fineprint":"on","ticbits":"1","colorscheme":"DEFAULT","color1":"green","color2":"blue","color3":"red","color4":"black","color5":"purple","color6":"orange","color1":"black", } for k,v in kwds.items( ): values[k] = str(v) data = urllib.urlencode(values) req = urllib2.Request(url,data) response = urllib2.urlopen(req) f = open(fname,"w") im = response.read( ) f.write(im) f.close( ) |
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def weblogo(self,fname,format = "PNG", **kwds): """ uses the Berkeley weblogo service to download and save a weblogo of itself requires an internet connection. The parameters from **kwds are passed directly to the weblogo server. """ import urllib import urllib2 al = self._to_fasta( ) url = "http://weblogo.berkeley.edu/logo.cgi" values = {"sequence":al,"format":format,"logowidth":"18","logoheight":"5","logounits":"cm","kind":"AUTO","firstnum":"1","command":"Create Logo","smallsamplecorrection":"on","symbolsperline":32,"res":"96","res_units":"ppi","antialias":"on","title":"","barbits":"","xaxis":"on","xaxis_label":"","yaxis":"on","yaxis_label":"","showends":"on","shrink":"0.5","fineprint":"on","ticbits":"1","colorscheme":"DEFAULT","color1":"green","color2":"blue","color3":"red","color4":"black","color5":"purple","color6":"orange","color1":"black", } for k,v in kwds.items( ): values[k] = str(v) data = urllib.urlencode(values) req = urllib2.Request(url,data) response = urllib2.urlopen(req) f = open(fname,"w") im = response.read( ) f.write(im) f.close( ) |
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def weblogo(self,fname,format = "PNG", **kwds): """ uses the Berkeley weblogo service to download and save a weblogo of itself requires an internet connection. The parameters from **kwds are passed directly to the weblogo server. """ import urllib import urllib2 #import Image al = self. [[#variable60100e20]]( ) url = "http://weblogo.berkeley.edu/logo.cgi" values = {"sequence":al,"format":format,"logowidth":"18","logoheight":"5","logounits":"cm","kind":"AUTO","firstnum":"1","command":"Create Logo","smallsamplecorrection":"on","symbolsperline":32,"res":"96","res_units":"ppi","antialias":"on","title":"","barbits":"","xaxis":"on","xaxis_label":"","yaxis":"on","yaxis_label":"","showends":"on","shrink":"0.5","fineprint":"on","ticbits":"1","colorscheme":"DEFAULT","color1":"green","color2":"blue","color3":"red","color4":"black","color5":"purple","color6":"orange","color1":"black", } for k,v in kwds.items( ): values[k] = str(v) data = urllib.urlencode(values) req = urllib2.Request(url,data) response = urllib2.urlopen(req) f = open(fname,"w") im = response.read( ) f.write(im) f.close( ) |
CloneAbstraction |
Parameter Index | Clone Instance | Parameter Name | Value |
---|---|---|---|
1 | 1 | [[#60100e20]] | to_fasta |
1 | 2 | [[#60100e20]] | _to_fasta |