Previous CloneSet | Next CloneSet | Back to Main Report |
Clone Mass | Clones in CloneSet | Parameter Count | Clone Similarity | Syntax Category [Sequence Length] |
---|---|---|---|---|
23 | 5 | 3 | 0.975 | compound_stmt |
Clone Abstraction | Parameter Bindings |
Clone Instance (Click to see clone) | Line Count | Source Line | Source File |
---|---|---|---|
1 | 20 | 136 | Bio/Entrez/__init__.py |
2 | 23 | 157 | Bio/Entrez/__init__.py |
3 | 17 | 181 | Bio/Entrez/__init__.py |
4 | 17 | 199 | Bio/Entrez/__init__.py |
5 | 23 | 217 | Bio/Entrez/__init__.py |
| ||||
def elink( **keywds): """ELink checks for linked external articles and returns a handle. ELink checks for the existence of an external or Related Articles link from a list of one or more primary IDs; retrieves IDs and relevancy scores for links to Entrez databases or Related Articles; creates a hyperlink to the primary LinkOut provider for a specific ID and database, or lists LinkOut URLs and attributes for multiple IDs. See the online documentation for an explanation of the parameters: http://www.ncbi.nlm.nih.gov/entrez/query/static/elink_help.html Return a handle to the results, by default in XML format. Raises an IOError exception if there's a network error. """ cgi = "http://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi" variables = { } variables.update(keywds) return _open(cgi,variables) |
| ||||
def einfo( **keywds): """EInfo returns a summary of the Entez databases as a results handle. EInfo provides field names, index term counts, last update, and available links for each Entrez database. See the online documentation for an explanation of the parameters: http://www.ncbi.nlm.nih.gov/entrez/query/static/einfo_help.html Return a handle to the results, by default in XML format. Raises an IOError exception if there's a network error. Short example: from Bio import Entrez record = Entrez.read(Entrez.einfo()) print record['DbList'] """ cgi = "http://eutils.ncbi.nlm.nih.gov/entrez/eutils/einfo.fcgi" variables = { } variables.update(keywds) return _open(cgi,variables) |
| ||||
def esummary( **keywds): """ESummary retrieves document summaries as a results handle. ESummary retrieves document summaries from a list of primary IDs or from the user's environment. See the online documentation for an explanation of the parameters: http://www.ncbi.nlm.nih.gov/entrez/query/static/esummary_help.html Return a handle to the results, by default in XML format. Raises an IOError exception if there's a network error. """ cgi = "http://eutils.ncbi.nlm.nih.gov/entrez/eutils/esummary.fcgi" variables = { } variables.update(keywds) return _open(cgi,variables) |
| ||||
def egquery( **keywds): """EGQuery provides Entrez database counts for a global search. EGQuery provides Entrez database counts in XML for a single search using Global Query. See the online documentation for an explanation of the parameters: http://www.ncbi.nlm.nih.gov/entrez/query/static/egquery_help.html Return a handle to the results in XML format. Raises an IOError exception if there's a network error. """ cgi = "http://eutils.ncbi.nlm.nih.gov/entrez/eutils/egquery.fcgi" variables = { } variables.update(keywds) return _open(cgi,variables) |
| ||||
def espell( **keywds): """ESpell retrieves spelling suggestions, returned in a results handle. ESpell retrieves spelling suggestions, if available. See the online documentation for an explanation of the parameters: http://www.ncbi.nlm.nih.gov/entrez/query/static/espell_help.html Return a handle to the results, by default in XML format. Raises an IOError exception if there's a network error. Short example: from Bio import Entrez record = Entrez.read(Entrez.espell(term="biopythooon")) print record["Query"] print record["CorrectedQuery"] """ cgi = "http://eutils.ncbi.nlm.nih.gov/entrez/eutils/espell.fcgi" variables = { } variables.update(keywds) return _open(cgi,variables) |
| |||
def [[#variable76c13aa0]]( **keywds): [[#variable76c13a40]] cgi = [[#variable76c139c0]] variables = { } variables.update(keywds) return _open(cgi,variables) |
CloneAbstraction |
Parameter Index | Clone Instance | Parameter Name | Value |
---|---|---|---|
1 | 1 | [[#76c13aa0]] | espell |
1 | 2 | [[#76c13aa0]] | egquery |
1 | 3 | [[#76c13aa0]] | esummary |
1 | 4 | [[#76c13aa0]] | einfo |
1 | 5 | [[#76c13aa0]] | elink |
2 | 1 | [[#76c13a40]] | """ESpell retrieves spelling suggestions, returned in a results handle. ESpell retrieves spelling suggestions, if available. See the online documentation for an explanation of the parameters: http://www.ncbi.nlm.nih.gov/entrez/query/static/espell_help.html Return a handle to the results, by default in XML format. Raises an IOError exception if there's a network error. Short example: from Bio import Entrez record = Entrez.read(Entrez.espell(term="biopythooon")) print record["Query"] print record["CorrectedQuery"] """ |
2 | 2 | [[#76c13a40]] | """EGQuery provides Entrez database counts for a global search. EGQuery provides Entrez database counts in XML for a single search using Global Query. See the online documentation for an explanation of the parameters: http://www.ncbi.nlm.nih.gov/entrez/query/static/egquery_help.html Return a handle to the results in XML format. Raises an IOError exception if there's a network error. """ |
2 | 3 | [[#76c13a40]] | """ESummary retrieves document summaries as a results handle. ESummary retrieves document summaries from a list of primary IDs or from the user's environment. See the online documentation for an explanation of the parameters: http://www.ncbi.nlm.nih.gov/entrez/query/static/esummary_help.html Return a handle to the results, by default in XML format. Raises an IOError exception if there's a network error. """ |
2 | 4 | [[#76c13a40]] | """EInfo returns a summary of the Entez databases as a results handle. EInfo provides field names, index term counts, last update, and available links for each Entrez database. See the online documentation for an explanation of the parameters: http://www.ncbi.nlm.nih.gov/entrez/query/static/einfo_help.html Return a handle to the results, by default in XML format. Raises an IOError exception if there's a network error. Short example: from Bio import Entrez record = Entrez.read(Entrez.einfo()) print record['DbList'] """ |
2 | 5 | [[#76c13a40]] | """ELink checks for linked external articles and returns a handle. ELink checks for the existence of an external or Related Articles link from a list of one or more primary IDs; retrieves IDs and relevancy scores for links to Entrez databases or Related Articles; creates a hyperlink to the primary LinkOut provider for a specific ID and database, or lists LinkOut URLs and attributes for multiple IDs. See the online documentation for an explanation of the parameters: http://www.ncbi.nlm.nih.gov/entrez/query/static/elink_help.html Return a handle to the results, by default in XML format. Raises an IOError exception if there's a network error. """ |
3 | 1 | [[#76c139c0]] | "http://eutils.ncbi.nlm.nih.gov/entrez/eutils/espell.fcgi" |
3 | 2 | [[#76c139c0]] | "http://eutils.ncbi.nlm.nih.gov/entrez/eutils/egquery.fcgi" |
3 | 3 | [[#76c139c0]] | "http://eutils.ncbi.nlm.nih.gov/entrez/eutils/esummary.fcgi" |
3 | 4 | [[#76c139c0]] | "http://eutils.ncbi.nlm.nih.gov/entrez/eutils/einfo.fcgi" |
3 | 5 | [[#76c139c0]] | "http://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi" |