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| Clone Mass | Clones in CloneSet | Parameter Count | Clone Similarity | Syntax Category [Sequence Length] |
|---|---|---|---|---|
| 17 | 3 | 5 | 0.971 | file_input_element_list[10] |
| Clone Abstraction | Parameter Bindings |
| Clone Instance (Click to see clone) | Line Count | Source Line | Source File |
|---|---|---|---|
| 1 | 17 | 9 | Scripts/Registry/biocorba_db_ex.py |
| 2 | 17 | 14 | Scripts/Registry/biosql_db_ex.py |
| 3 | 17 | 9 | Scripts/Registry/indexed_db_ex.py |
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from Bio import register_db register_db(name = "biocorba-test-fred",key = "accession",source = fred_corba,failure = [ ]) # deal with the database from Bio import db biocorba_db = db["biocorba-test-fred"] rec = biocorba_db["X55053"] print rec print rec.description print rec.id print rec.name print rec.seq.data[0:20] |
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from Bio import register_db register_db(name = "biosql-embl-fred",key = "accession",source = fred_db,failure = [ ]) # deal with the database from Bio import db biosql_db = db["biosql-embl-fred"] rec = biosql_db["AB030760"] print rec print rec.description print rec.id print rec.name print rec.seq.data[0:20] |
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from Bio import register_db register_db(name = "indexfile-test-swissprot",key = "id",source = index_file,failure = [ ]) # deal with the database from Bio import db indexed_db = db["indexfile-test-swissprot"] rec = indexed_db["N33_HUMAN"] print rec print rec.description print rec.id print rec.name print rec.seq.data[0:20] |
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from Bio import register_db register_db(name = [[#variable78092e00]],key = [[#variable78092ba0]],source = [[#variable78092bc0]],failure = [ ]) # deal with the database from Bio import db [[#variable78092b80]]= db[ [[#variable78092e00]]] rec = [[#variable78092b80]][ [[#variable780929c0]]] print rec print rec.description print rec.id print rec.name print rec.seq.data[0:20] |
| CloneAbstraction |
| Parameter Index | Clone Instance | Parameter Name | Value |
|---|---|---|---|
| 1 | 1 | [[#78092e00]] | "biocorba-test-fred" |
| 1 | 2 | [[#78092e00]] | "biosql-embl-fred" |
| 1 | 3 | [[#78092e00]] | "indexfile-test-swissprot" |
| 2 | 1 | [[#78092ba0]] | "accession" |
| 2 | 2 | [[#78092ba0]] | "accession" |
| 2 | 3 | [[#78092ba0]] | "id" |
| 3 | 1 | [[#78092bc0]] | fred_corba |
| 3 | 2 | [[#78092bc0]] | fred_db |
| 3 | 3 | [[#78092bc0]] | index_file |
| 4 | 1 | [[#78092b80]] | biocorba_db |
| 4 | 2 | [[#78092b80]] | biosql_db |
| 4 | 3 | [[#78092b80]] | indexed_db |
| 5 | 1 | [[#780929c0]] | "X55053" |
| 5 | 2 | [[#780929c0]] | "AB030760" |
| 5 | 3 | [[#780929c0]] | "N33_HUMAN" |